TCONS_00040179-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00040179-protein
Unique NameTCONS_00040179-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length382

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00040179-protein ID=TCONS_00040179-protein|Name=TCONS_00040179-protein|organism=Clytia hemisphaerica|type=polypeptide|length=382bp
MFAIWLVVLNNFLFLNLSEGVTWSAKRDACIKGNNNEVFVSMTFDLCKSH
CEQATSYVCASFELNLSNNVCLTSSSNSRSGSYTEPCYNGPHDYAEILDG
GWSAWGSWGSCSTACGSGTESRSRDCNNPTPLPGGSCNGPSTESQSCNDG
PCPVDGQWGSWTSWNTCTESCAGGTHSRSRSCDSPSPDHGGSQCSGSASD
SQSCNTHPCPIHGVWTGWGSWQSCNITCGGGEENRTRTCTNPPPQHGGDP
CSGDPIDIQSCNIHPCPIHGNWSQWSNWTECDKPCGVGFQNRSRTCTNPP
PQHGGDNCTDHDAERSFCNEHPCTDMCDTPKKTCNCSGVPVIYDMSKLQT
NDTFYGIDETAVNASLTSIGIWDAEQIKLVCK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_024379XLOC_024379Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00040179TCONS_00040179Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000884TSP1_rpt
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR01705TSP1REPEATcoord: 118..129
score: 45.24
coord: 136..147
score: 37.72
coord: 100..113
score: 50.51
NoneNo IPR availableGENE3D3.50.4.10coord: 14..94
e-value: 1.5E-5
score: 24.5
IPR000884Thrombospondin type-1 (TSP1) repeatSMARTSM00209TSP1_2coord: 102..153
e-value: 1.7E-11
score: 54.2
coord: 215..267
e-value: 3.9E-11
score: 53.0
coord: 272..324
e-value: 2.2E-14
score: 63.8
coord: 158..210
e-value: 1.7E-11
score: 54.2
IPR000884Thrombospondin type-1 (TSP1) repeatPFAMPF00090TSP_1coord: 103..152
e-value: 1.2E-9
score: 38.2
coord: 160..209
e-value: 3.3E-8
score: 33.5
coord: 217..266
e-value: 1.1E-11
score: 44.6
coord: 273..323
e-value: 2.6E-12
score: 46.7
IPR000884Thrombospondin type-1 (TSP1) repeatGENE3D2.20.100.10coord: 211..266
e-value: 2.4E-17
score: 62.5
coord: 154..209
e-value: 8.5E-15
score: 54.3
coord: 268..323
e-value: 6.9E-17
score: 61.0
IPR000884Thrombospondin type-1 (TSP1) repeatGENE3D2.20.100.10coord: 96..153
e-value: 1.4E-14
score: 53.7
IPR000884Thrombospondin type-1 (TSP1) repeatPROSITEPS50092TSP1coord: 212..267
score: 13.482
IPR000884Thrombospondin type-1 (TSP1) repeatPROSITEPS50092TSP1coord: 269..324
score: 13.738
IPR000884Thrombospondin type-1 (TSP1) repeatPROSITEPS50092TSP1coord: 99..153
score: 14.036
IPR000884Thrombospondin type-1 (TSP1) repeatPROSITEPS50092TSP1coord: 155..210
score: 13.537
IPR000884Thrombospondin type-1 (TSP1) repeatSUPERFAMILY82895TSP-1 type 1 repeatcoord: 98..152
IPR000884Thrombospondin type-1 (TSP1) repeatSUPERFAMILY82895TSP-1 type 1 repeatcoord: 208..266
IPR000884Thrombospondin type-1 (TSP1) repeatSUPERFAMILY82895TSP-1 type 1 repeatcoord: 265..323
IPR000884Thrombospondin type-1 (TSP1) repeatSUPERFAMILY82895TSP-1 type 1 repeatcoord: 151..209

Blast
BLAST of TCONS_00040179-protein vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2)

HSP 1 Score: 236.498 bits (602), Expect = 3.616e-69
Identity = 103/227 (45.37%), Postives = 136/227 (59.91%), Query Frame = 0
Query:   98 LDGGWSAWGSWGSCSTACGSGTESRSRDCNNPTPLPGGS-CNGPSTESQSCNDGPCPVDGQWGSWTSWNTCTESCAGGTHSRSRSCDSPSPDHGGSQCSGSASDSQSCNTHPCPIHGVWTGWGSWQSCNITCGGGEENRTRTCTNPPPQHGGDPCSGDPIDIQSCNIHPCPIHGNWSQWSNWTECDKPCGVGFQNRSRTCTNPPPQHGGDNCTDHDAERSFCNEHPC 323
            + GG+S W +W +CS  CG G + RSR CN P P  GG  C G   E ++C + PCPVDG W  W+ W  CT SC  G  +R+R+C++PS  HGG  C G+A +   CN  PCP+HG W+ W  W +C+ +CG G + R R C NPPP  GG  C G    +Q CN   CPIHG W+ W++W+ C   CG G + R+R C++P PQ+GG  C   D +  FCN  PC
Sbjct: 4528 VHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPC 4754          

HSP 2 Score: 232.646 bits (592), Expect = 7.776e-68
Identity = 110/231 (47.62%), Postives = 138/231 (59.74%), Query Frame = 0
Query:   98 LDGGWSAWGSWGSCSTACGSGTESRSRDCNNPTPLPGGS-CNGPSTESQSCNDGPCPVDGQWGSWTSWNTCTESCAGGTHSRSRSCDSPSPDHGGSQCSGSASDSQSCNTHPCPIHGVWTGWGSWQSCNITCGGGEENRTRTCTNPPPQHGGDPCSGDPIDIQSCNIHPCPIHGNWSQWSNWTECDKPCGVGFQNRSRTCTNPPPQHGGDNCTDHDAERSFCNEHPCTDMC 327
            +DG WS W  W  C+ +CG G ++R+R CNNP+   GG  C G + E   CN  PCPV G W +W  W TC+ESC  GT +R+R C++P P  GGS C G+ +  Q CN   CPIHG W  W SW +C+++CGGG   RTR C++P PQ+GG  C G  +    CN  PCP HGNWS WS W  C + C  G   R RTC NPPP +GG  C   D++   CN    TDMC
Sbjct: 4585 VDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCN----TDMC 4811          

HSP 3 Score: 225.328 bits (573), Expect = 2.588e-65
Identity = 104/227 (45.81%), Postives = 136/227 (59.91%), Query Frame = 0
Query:   98 LDGGWSAWGSWGSCSTACGSGTESRSRDCNNPTPLPGGS-CNGPSTESQSCNDGPCPVDGQWGSWTSWNTCTESCAGGTHSRSRSCDSPSPDHGGSQCSGSASDSQSCNTHPCPIHGVWTGWGSWQSCNITCGGGEENRTRTCTNPPPQHGGDPCSGDPIDIQSCNIHPCPIHGNWSQWSNWTECDKPCGVGFQNRSRTCTNPPPQHGGDNCTDHDAERSFCNEHPC 323
            + G WSAW  WG+CS +CG GT++R+R CNNP P  GGS C+G  T+ Q CN+  CP+ G+W +W SW+ C+ SC GG   R+R C  P P +GG +C GS   S  CN+ PCP HG W+ W  W +C+ TC GG+  R RTC NPPP +GG  C G    IQ CN   CP+ G+W  W +W++C   CG G + R R C +P P  GG  C     + + CN   C
Sbjct: 4642 VHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQAC 4868          

HSP 4 Score: 171.785 bits (434), Expect = 5.806e-47
Identity = 77/171 (45.03%), Postives = 98/171 (57.31%), Query Frame = 0
Query:   98 LDGGWSAWGSWGSCSTACGSGTESRSRDCNNPTPLPGG-SCNGPSTESQSCNDGPCPVDGQWGSWTSWNTCTESCAGGTHSRSRSCDSPSPDHGGSQCSGSASDSQSCNTHPCPIHGVWTGWGSWQSCNITCGGGEENRTRTCTNPPPQHGGDPCSGDPIDIQSCNIHPCP 267
            + G W+ W SW +CS +CG G   R+R C++P P  GG  C G   +S  CN  PCP  G W  W+ W TC+ +C GG   R R+CD+P P +GG  C G  S  Q CNT  CP+ G W  W SW  C+ +CGGGE+ R R C +P P  GG PC GD   +  CN+  CP
Sbjct: 4699 IHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQACP 4869          
The following BLAST results are available for this feature:
BLAST of TCONS_00040179-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HMCN13.616e-6945.37Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2[more]
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