TCONS_00039764-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00039764-protein
Unique Name	TCONS_00039764-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	556

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00039764-protein ID=TCONS_00039764-protein|Name=TCONS_00039764-protein|organism=Clytia hemisphaerica|type=polypeptide|length=556bp
LAEQPDVITGRLLKALVQTLFGGPPTNDQPLQQDEDDVFPKQSSQAPPSS
SQQNNKTHPRVVARVLSIAGYIALMHLYHLDVSILSELKRRHNIQEEEKE
RKGKKNGKTPGGSRRKSGARDSSIHKDSGLDDEMGVGGAAAEDAEAEYIR
KICEREIVTGDNLLSVFAPVAVMICKNPSAYKNTELRSSAALALSRFMMV
SSEFCDQHLQLVFTILEKSEFAIVRSNMMITLGDLCFRFPNLIEPWTPNL
YARLRDESVEVRKTAVTILTHLILNDMLKVKGLISEMAICLEDKEDKIAS
SAKSLFAELARKGNALYNIAPDIISRLSDPDTGVDESVFRIIMKYILQFI
QKDKQAESLVEKLCHRFRATRTDRQWRDLSFCLSLLPYTEKTLKKLMENI
RCYHDKLSDDDVYSCFTTIISKSKKFSKQEFKTLVEEFESTIEGYHNKGV
EENADFDKAAKVLSQAATQENTTKNRKKSTRTARKPKPWEVDDSEEDVET
NDNEPPKHPSRKSTRNVTKKTTKDKSDDDFSDKENRKALPGGKRKTTEKK
RKTVRX

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_024052	XLOC_024052	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00039764	TCONS_00039764	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR011989	ARM-like
IPR032682	Cnd1_C
IPR016024	ARM-type_fold

Vocabulary: **Molecular Function**
Term	Definition
GO:0005488	binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005488	binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 85..105
IPR011989	Armadillo-like helical	GENE3D	1.25.10.10		coord: 8..503 e-value: 3.7E-30 score: 104.3
IPR032682	Condensin complex subunit 1, C-terminal	PFAM	PF12717	Cnd1	coord: 223..384 e-value: 4.5E-54 score: 182.7
IPR016024	Armadillo-type fold	SUPERFAMILY	48371	ARM repeat	coord: 147..378 coord: 412..444

Blast

[Close]

BLAST of TCONS_00039764-protein vs. Swiss-Prot (Human)
Match: CND1 (Condensin complex subunit 1 OS=Homo sapiens GN=NCAPD2 PE=1 SV=3)

HSP 1 Score: 417.542 bits (1072), Expect = 4.378e-132
Identity = 221/535 (41.31%), Postives = 336/535 (62.80%), Query Frame = 0

Query:    1 LAEQPDVITGRLLKALVQTLFGGPPTNDQPLQQDEDDVFPKQSSQAPPSSSQQNNKTHPRVVARVLSIAGYIALMHLYHLDVSILSELKRRHNIQEEEKERKGKKNGKTPGGSRRKSGARDSSIHKDSGLDDEMGVGGAAAEDAEAEYIRKICEREIVTGDNLLSVFAPVAVMICKNPSAYKNTELRSSAALALSRFMMVSSEFCDQHLQLVFTILEKSEFAIVRSNMMITLGDLCFRFPNLIEPWTPNLYARLRDESVEVRKTAVTILTHLILNDMLKVKGLISEMAICLEDKEDKIASSAKSLFAELARKGNALYNIAPDIISRLSDPDTGVDESVFRIIMKYILQFIQKDKQAESLVEKLCHRFRATRTDRQWRDLSFCLSLLPYTEKTLKKLMENIRCYHDKLSDDDVYSCFTTIISKSKKFSKQEFKTLVEEFESTIEGYHNKGVEENADFDKAAKVLSQAATQENTTKNRKKSTRTARKPKPWEVDDSEEDVETNDNEPPKHPSRKSTRNVTKKTTKDKSDDDFSDKEN 535
            LAE P+VI  ++L+   +          Q L++ E+    K++SQ  P  S     T   ++  +LS+AG +AL  L HL+ ++  EL RR  ++EE++ +      K P         ++ +   ++ +++E+G+ GA A+D EAE IR ICE E++ G   L+ F P+ + +C NP  Y N +L ++A+LAL +F M+S+ FCD  L+L+FT+LEKS   IVRSN+M+  GDL  RFPNL++PWTP+LYARLRD + +VRKTA  ++THLIL DM+KVKG +SEMA+ L D E +IA+ AK+ F EL+ KGNA+YN+ PDIISRLSDP+ GV+E  F  IMK +L +I KDKQ ESLVEKLC RFR +RT+RQ RDL++C+S LP TE+ L+K+++N  C+ DKLSD+ ++S F +++ K ++ +K E K +++EFE  +   H +G++   + +     + QA +Q   +    K   T  + +P     S+ D  T +   P+  +R+   N  ++ +K K    FS  E+
Sbjct:  878 LAEGPEVICAQILQGCAK----------QALEKLEE----KRTSQEDPKESPAMLPTF--LLMNLLSLAGDVALQQLVHLEQAVSGELCRRRVLREEQEHKT-----KDP---------KEKNTSSETTMEEELGLVGATADDTEAELIRGICEMELLDGKQTLAAFVPLLLKVCNNPGLYSNPDLSAAASLALGKFCMISATFCDSQLRLLFTMLEKSPLPIVRSNLMVATGDLAIRFPNLVDPWTPHLYARLRDPAQQVRKTAGLVMTHLILKDMVKVKGQVSEMAVLLIDPEPQIAALAKNFFNELSHKGNAIYNLLPDIISRLSDPELGVEEEPFHTIMKQLLSYITKDKQTESLVEKLCQRFRTSRTERQQRDLAYCVSQLPLTERGLRKMLDNFDCFGDKLSDESIFSAFLSVVGKLRRGAKPEGKAIIDEFEQKLRACHTRGLDGIKELE-----IGQAGSQRAPS---AKKPSTGSRYQPLASTASDNDFVTPE---PRRTTRRHP-NTQQRASKKKPKVVFSSDES 1370

The following BLAST results are available for this feature:

BLAST of TCONS_00039764-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00039764-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
CND1	4.378e-132	41.31	Condensin complex subunit 1 OS=Homo sapiens GN=NCA...	[more]

You are here

TCONS_00039764-protein (polypeptide) - C. hemisphaerica