TCONS_00039753-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00039753-protein
Unique NameTCONS_00039753-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length664

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00039753-protein ID=TCONS_00039753-protein|Name=TCONS_00039753-protein|organism=Clytia hemisphaerica|type=polypeptide|length=664bp
SSGKFGTSDKSPACGRLVCDIKISAKELIRCKSYDLKELVSVILNKERND
LLPEDIPVKLRKTDTLMSMIWENRMDAIYNLQIMYELNILPLAYQITCIC
GNVLSRTLLGGRSERNEFLLLHAFSKKNYILPDKSYNQKHIHTTEHEEEN
DEIAPTQTQATQSTQKQGASKKRSKGRKKPAYPGGLVLEPKKGFYDKFIL
LLDFNSLYPSIIQEYNICFTTIAREMKKSVIEGEELLPDVPESGLEFGIL
PTEIKRLVERRRQVKKLLKTVTEGSELYLQYDIRQKALKLTANSMYGCLG
FSHSRFYAKPLAALVTGKGREILMKTKDLASNLGLDVIYGDTDSIMINTN
CDDWNEVRKIGTKVKQEVNKLYKMIEIDIDGIFKSMLLLKKKKYAAGMIL
DRKPDGTFVEKREMKGLDIVRRDWSDLAKDAGNYVLGEILSAKSRDVIVE
NIHDYLRNLKDQIDNDQVDQSKYEIHKSLTKNPEEYPDKKSLPHVTVALR
LKTQGRRVAVGDTISYVICDDSSKLAATQRAYHLEELTKSTSLKIDKQYY
LSSQIHPLVSRLCDPIEGTDATFIAESLGLDPTQYKSATNHHGGDDPNVS
VLMTDEERFKEDPLNCSQCKQDYKMNHVRNALRLFIREKQHKYYNCWLKT
SRTRTYVNNVIVAT
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_024043XLOC_024043Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00039753TCONS_00039753Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006172DNA-dir_DNA_pol_B
IPR012337RNaseH-like_dom
IPR023211DNA_pol_palm_dom
IPR006134DNA-dir_DNA_pol_B_multi_dom
IPR017964DNA-dir_DNA_pol_B_CS
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0000166nucleotide binding
GO:0003887DNA-directed DNA polymerase activity
GO:0003677DNA binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003677 DNA binding
molecular_function GO:0003887 DNA-directed DNA polymerase activity
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0000166 nucleotide binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006172DNA-directed DNA polymerase, family BPRINTSPR00106DNAPOLBcoord: 285..297
score: 56.49
coord: 199..212
score: 60.18
coord: 337..345
score: 75.87
IPR006172DNA-directed DNA polymerase, family BSMARTSM00486polmehr3coord: 2..351
e-value: 3.5E-54
score: 196.0
IPR012337Ribonuclease H-like domainGENE3D3.30.420.10coord: 1..110
e-value: 8.1E-9
score: 34.7
IPR012337Ribonuclease H-like domainSUPERFAMILY53098Ribonuclease H-likecoord: 13..132
NoneNo IPR availableTIGRFAMTIGR00592TIGR00592coord: 4..563
e-value: 6.6E-240
score: 797.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 143..182
NoneNo IPR availableCDDcd05532POLBc_alphacoord: 180..581
e-value: 0.0
score: 660.04
NoneNo IPR availableSUPERFAMILY56672DNA/RNA polymerasescoord: 175..580
coord: 127..134
IPR023211DNA polymerase, palm domainGENE3D3.90.1600.10coord: 165..385
e-value: 6.4E-64
score: 214.8
IPR006134DNA-directed DNA polymerase, family B, multifunctional domainPFAMPF00136DNA_pol_Bcoord: 97..566
e-value: 8.8E-126
score: 420.2
IPR017964DNA-directed DNA polymerase, family B, conserved sitePROSITEPS00116DNA_POLYMERASE_Bcoord: 339..347

Blast
[Close]
BLAST of TCONS_00039753-protein vs. Swiss-Prot (Human)
Match: DPOLA (DNA polymerase alpha catalytic subunit OS=Homo sapiens GN=POLA1 PE=1 SV=2)

HSP 1 Score: 688.337 bits (1775), Expect = 0.000e+0
Identity = 360/620 (58.06%), Postives = 458/620 (73.87%), Query Frame = 0 
Query:    2 SGKFGTSDKSPACGRLVCDIKISAKELIRCKSYDLKELVSVILNKERNDLLPEDIPVKLRKTDTLMSMIWENRMDAIYNLQIMYELNILPLAYQITCICGNVLSRTLLGGRSERNEFLLLHAFSKKNYILPDKSYNQKHIHTTEHEEENDEIAPTQTQATQSTQKQGASKKRSKGRKKPAYPGGLVLEPKKGFYDKFILLLDFNSLYPSIIQEYNICFTTIAR---EMKKSVIEGE-ELLPDVPESGLEFGILPTEIKRLVERRRQVKKLLKTVTEGSELYLQYDIRQKALKLTANSMYGCLGFSHSRFYAKPLAALVTGKGREILMKTKDLASNLGLDVIYGDTDSIMINTNCDDWNEVRKIGTKVKQEVNKLYKMIEIDIDGIFKSMLLLKKKKYAAGMILDRKPDGTFVEKREMKGLDIVRRDWSDLAKDAGNYVLGEILSAKSRDVIVENIHDYLRNLKDQIDNDQVDQSKYEIHKSLTKNPEEYPDKKSLPHVTVALRLKTQ-GRRVAVGDTISYVICDDSSKLAATQRAYHLEELTKSTSLKIDKQYYLSSQIHPLVSRLCDPIEGTDATFIAESLGLDPTQYKSATNHHGGDDPNVSVL-----MTDEERFKE 611
             G+ G  +++  CGR++CD++ISAKELIRCKSY L ELV  IL  ER  +  E+I     ++  L+ ++     DA + LQIM ELN+LPLA QIT I GN++SRTL+GGRSERNEFLLLHAF + NYI+PDK   +K               P Q    +  +  G + K  KGRKK AY GGLVL+PK GFYDKFILLLDFNSLYPSIIQE+NICFTT+ R   E +K   +GE E +P++P+  LE GILP EI++LVERR+QVK+L+K      +L LQYDIRQKALKLTANSMYGCLGFS+SRFYAKPLAALVT KGREILM TK++   + L+VIYGDTDSIMINTN  +  EV K+G KVK EVNKLYK++EIDIDG+FKS+LLLKKKKYAA ++++   DG +V K+E+KGLDIVRRDW DLAKD GN+V+G+ILS +SRD IVENI   L  + + + N  V  S++EI+K+LTK+P++YPDKKSLPHV VAL + +Q GR+V  GDT+SYVIC D S L A+QRAY  E+L K  +L ID QYYL+ QIHP+V+R+C+PI+G DA  IA  LGLDPTQ++   +H+  D+ N ++L     +TDEE++++
Sbjct:  674 GGRSGFGERNATCGRMICDVEISAKELIRCKSYHLSELVQQILKTERVVIPMENIQNMYSESSQLLYLLEHTWKDAKFILQIMCELNVLPLALQITNIAGNIMSRTLMGGRSERNEFLLLHAFYENNYIVPDKQIFRK---------------PQQKLGDEDEEIDGDTNKYKKGRKKAAYAGGLVLDPKVGFYDKFILLLDFNSLYPSIIQEFNICFTTVQRVASEAQKVTEDGEQEQIPELPDPSLEMGILPREIRKLVERRKQVKQLMKQQDLNPDLILQYDIRQKALKLTANSMYGCLGFSYSRFYAKPLAALVTYKGREILMHTKEMVQKMNLEVIYGDTDSIMINTNSTNLEEVFKLGNKVKSEVNKLYKLLEIDIDGVFKSLLLLKKKKYAA-LVVEPTSDGNYVTKQELKGLDIVRRDWCDLAKDTGNFVIGQILSDQSRDTIVENIQKRLIEIGENVLNGSVPVSQFEINKALTKDPQDYPDKKSLPHVHVALWINSQGGRKVKAGDTVSYVICQDGSNLTASQRAYAPEQLQKQDNLTIDTQYYLAQQIHPVVARICEPIDGIDAVLIATWLGLDPTQFR--VHHYHKDEENDALLGGPAQLTDEEKYRD 1275
The following BLAST results are available for this feature:
BLAST of TCONS_00039753-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DPOLA0.000e+058.06DNA polymerase alpha catalytic subunit OS=Homo sap... [more]
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