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Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00038791-protein ID=TCONS_00038791-protein|Name=TCONS_00038791-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1066bp
MDNCIKCGKKCEIKNLRQLCSKCHHLRTPNVKLKKRAKLQEVSDNSKDSD
YSPSSPSSGSATVSEEKRHRDTDADSLSSSTDNEDGKVNETRKKKQFHKT
KAIKSSEQRYHDTDQDSLSSSNDSEHEEEKKVTKQSSKKKANEHRNPRKM
SIRKRKAKESAESRKPSISPTDSGNKKDNQVKKPKVENQPCSSKVTEDII
NYFGVANPLTPNKKQYNYKCPFQDCSYDQKDLKRHLMTVHSWVENRAKLE
VSCRLKMFRYLSNSSKAGTYKPKVCKKCNICVERFSKHLKNSHQNELKKV
KCIKKLTKRLAEKPKISIIGKQNNDDEESTLSSSSESDDSGDYGGYLSII
RHSKKLTERKLRNYKIEKEKFSFIYLTFRNLKADFLRWVSLIKTEDGAKQ
AASNLEKVWLCVDPKLSLLPNMLANLAILEDNFFLPAFLKIKANSKKGIP
NKDLKPSTVMGRLSSLKLLLDFVSSRRLYIGLTWHDIEMLRIKLKEFHNR
LKPFHKARERFMQTFKSTRILTPSDMNVYGQAPQIQDIVDVLNNINDNNS
HHYSQKDAVAARNHLMVMITMGNAARASNLINLCQQEVNNAELEEEFDAY
AISSINYKTSLLYGVKKLLLGKDLFQQLNNYIKHLRPKITCDPDNDNLHV
FTSSREKGPMSHSAISNAMTTIFKSIPEFAMHERFQRISPTKLRHSIATQ
LAGVEREDLKTVAMQFMKNRPATTSRYYVCIWAQREASRLSMKCYGSFNI
SDTAIKKAKVPTPEETKAWFVKHKAAIQDDFGEVIKDDELVKAISNDDGL
DELDEGYLSDTDEVLAPNVGEESVKTCKTDKDEIKDLPQHWYRPRNIRPE
VFFKIIYLSSSSITGVDKISETEWKTKKMVFDDDDEFQKLNWSTINELLK
SMRKKFKKEKDHGSFNLLVESSVAYIKDLNYQDDETIIKATQDDSILSLA
ENNEIDFNMDDCAEEGSQNEVDQEDKVDTENEEAIEESAQVLKAEKQQNL
SEPLNTNLSSSSSIQEPKQKSVKVTGSKEEQKHTSPASPRTKKFDHPVKK
SKRNLLASFRKLNQIQ Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003677 | DNA binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006310 | DNA recombination |
| GO:0015074 | DNA integration |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0015074 |
DNA integration |
| biological_process |
GO:0006310 |
DNA recombination |
| molecular_function |
GO:0003677 |
DNA binding |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | COILS | Coil | Coil | coord: 574..594 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 34..190 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 996..1066 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 965..984 |
| None | No IPR available | CDD | cd00397 | DNA_BRE_C | coord: 562..727
e-value: 3.24343E-7
score: 49.0155 |
| IPR002104 | Integrase, catalytic domain | PFAM | PF00589 | Phage_integrase | coord: 556..728
e-value: 1.5E-5
score: 24.7 |
| IPR013762 | Integrase-like, catalytic domain | GENE3D | 1.10.443.10 | | coord: 529..730
e-value: 4.5E-14
score: 52.1 |
| IPR011010 | DNA breaking-rejoining enzyme, catalytic core | SUPERFAMILY | 56349 | DNA breaking-rejoining enzymes | coord: 555..728 |
Blast
The following BLAST results are available for this feature:
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