TCONS_00037848-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00037848-protein
Unique NameTCONS_00037848-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length404

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00037848-protein ID=TCONS_00037848-protein|Name=TCONS_00037848-protein|organism=Clytia hemisphaerica|type=polypeptide|length=404bp
MSKRANNSKTPEQKTLLQDYYDKGMTSYGKDHLEARQMVSQAAKETGLSE
KQVKDWISNHNKPPKVSKRDKLYLTKPRAYDVFRKKYFKELEGTVYDPQI
ALAKANEKWGQISKIERKIYEDEAEAVVVADFHELPIEDQRSKINDTRKK
ISRMCQELDGYGVEVLVMDYDTNDERATKEGVNSCGSLRSASFLEAENRL
EWRFAQFMDGILGKVAEENQEPRQAARKEVVDLLNNKIRALQIGRTTVPY
KAIVEGSVEVIGLPEGFHFRNPALMTKKELILIKENIDNISFLCPKPRSN
ESELEENEGESDDFFDIRMEDFCEWLKPDDYVPNSLKLRVTLRQVVEKDK
KGEGYIEKILDHYESTDGYMFSVKWVAYKEPTWTKGDGIPEEDLQPYKKR
YNLL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_022559XLOC_022559Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00037848TCONS_00037848Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004212GTF2I
IPR001356Homeobox_dom
IPR016197Chromodomain-like
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003677 DNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 137..157
NoneNo IPR availableGENE3D2.40.50.40coord: 356..402
e-value: 2.2E-5
score: 23.8
NoneNo IPR availableGENE3D1.10.10.60coord: 1..71
e-value: 2.7E-5
score: 23.4
NoneNo IPR availableCDDcd00086homeodomaincoord: 3..60
e-value: 0.00387462
score: 34.1413
IPR004212GTF2I-like repeatGENE3D3.90.1460.10coord: 224..302
e-value: 2.2E-8
score: 33.5
IPR004212GTF2I-like repeatPFAMPF02946GTF2Icoord: 227..293
e-value: 8.2E-7
score: 28.9
IPR004212GTF2I-like repeatPROSITEPS51139GTF2Icoord: 213..307
score: 9.322
IPR004212GTF2I-like repeatSUPERFAMILY117773GTF2I-like repeatcoord: 229..303
IPR001356Homeobox domainPROSITEPS50071HOMEOBOX_2coord: 1..67
score: 8.892
IPR016197Chromo domain-likeSUPERFAMILY54160Chromo domain-likecoord: 352..401

Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037848-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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