TCONS_00036953-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00036953-protein
Unique Name	TCONS_00036953-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	887

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00036953-protein ID=TCONS_00036953-protein|Name=TCONS_00036953-protein|organism=Clytia hemisphaerica|type=polypeptide|length=887bp
MASTGGSTNKIDPNSPTSLLFLLCRQILGKSGKKSIPEDVFDQQYQYALR
LIGSRFASPTVTDEFQVSQRIKRSLARQGRETDAAIFSELHSKLQSLDIL
KNRFGILYLLQTLARDPKAKDQTQYFGGTLDTLNNTTRLNISSRNNTTSS
SGYGGSINTTSDPTPDQTSFAPRSGLKNEAADIGIRFRANKTATSKDRDT
ADLAALVSRSMVVRQSMSHTLEMESSYRDQKVKQEEVVNPLLSKCFAANA
DGTLYEVTEKLLLRDVLYVFQGIEGRIIRFDATTESYKINKDIGISLPIR
DLVGKLAELGWLFRRVQKFLSARTGDKALGLVGQSFCAAIQKELTEYYRL
VAVLEGQDNQEDGNMASGSGLTLRRLMIWTYDPLLRMKALATLVDVCKGK
KGGSLLSAIYSHTQTGDPFIAKLVRHILHVVSHPIRSIIERWIFEGELQD
NYNEFFVAADPAVRNEKLWYDKYSIRKQMLPSFIPNELATKILNIGKSIN
FIRVVCEDRSPIFGHSAIKPSDPDEDSEFDERLRVDDLSSSALLDVINLV
YENTSKHLLDVLFRQYKLLDHLKAMRRYLLLGQGDFIRHLMDLLEPDLVR
PAHSLYMHNLTGLLEAAIRATNAQFDDPESLKRLDCRLLEISPGDCGWDV
FSLDYHVDGPISTVFTPEVILHYLRIFNFLWRAKRMEYCLTGIWKNQMSS
SRFLQKLPEVSPIVHASQCLEAEMVHFIHQMQYFITFEVLECCWEELLVK
INEAKDLDHVIEAHDTFLTQVMTRALMDNESRAMLTQLRAIFDLIIQFQS
TQENMYASAMAELEARQALEKKAEQKTAEGDWGLTEEDSMADIKRQAEFK
KTFLPSAKAQIRVLNQSYHVSRFVIQTKVILSASNYL

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_021830	XLOC_021830	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00036953	TCONS_00036953	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR007259	GCP

Vocabulary: **Biological Process**
Term	Definition
GO:0000226	microtubule cytoskeleton organization
GO:0007020	microtubule nucleation

Vocabulary: **Molecular Function**
Term	Definition
GO:0043015	gamma-tubulin binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0000922	spindle pole
GO:0005815	microtubule organizing center

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000226	microtubule cytoskeleton organization
biological_process	GO:0007020	microtubule nucleation
cellular_component	GO:0005815	microtubule organizing center
cellular_component	GO:0000922	spindle pole
molecular_function	GO:0043015	gamma-tubulin binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 809..829
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 140..175
IPR007259	Gamma-tubulin complex component protein	PFAM	PF04130	Spc97_Spc98	coord: 265..775 e-value: 1.2E-128 score: 430.2

Blast

[Close]

BLAST of TCONS_00036953-protein vs. Swiss-Prot (Human)
Match: GCP3 (Gamma-tubulin complex component 3 OS=Homo sapiens GN=TUBGCP3 PE=1 SV=2)

HSP 1 Score: 782.326 bits (2019), Expect = 0.000e+0
Identity = 415/892 (46.52%), Postives = 575/892 (64.46%), Query Frame = 0

Query:   12 DPNSPTSLLFLLCRQILGKSGKKSIPEDVFDQQYQYALRLIGSRFASPTVTDEFQVSQRIKRSLARQGRETDAAIFSELHSKLQSLDILKNRFGILYLLQTLARDPKAK-------------------DQTQYFGGTLDTL----NNTTRLNISSRNNTTSSSGYGGSINTTSDPTPDQTSFAPRSGLKNEAADIGIRFRANKTATSKDRDTADLAALVSRSMVVRQSMSHTLEMESSYRDQKVKQEEVVNPLLSKCFAANADGTLYEVTEKLLLRDVLYVFQGIEGRIIRFDATTESYKINKDIGISLPIRDLVGKLAELGWLFRRVQKFLSARTGDKALGLVGQSFCAAIQKELTEYYRLVAVLEGQDNQEDG---NMASGSGLTLRRLMIWTYDPLLRMKALATLVDVCKGKKGGSLLSAIYSHTQTGDPFIAKLVRHILHVVSHPIRSIIERWIFEGELQDNYNEFFVAADPAVRNEKLWYDKYSIRKQMLPSFIPNELATKILNIGKSINFIRVVCEDRSPIFGHSAIKPSDPDEDSEFDERLRVDDLSSSALLDVINLVYENTSKHLLDVLFRQYKLLDHLKAMRRYLLLGQGDFIRHLMDLLEPDLVRPAHSLYMHNLTGLLEAAIRATNAQFDDPESLKRLDCRLLEISPGDCGWDVFSLDYHVDGPISTVFTPEVILHYLRIFNFLWRAKRMEYCLTGIWKNQMSSSRFLQKLPEVSPIVHASQCLEAEMVHFIHQMQYFITFEVLECCWEELLVKINEAKDLDHVIEAHDTFLTQVMTRALMDNESRAMLTQLRAIFDLIIQFQSTQENMYASAMAELEARQALEKKAEQKTAEGDWGLTEEDSMADIKRQAEFKKTFLPSAKAQIRVLNQSYH--VSRFVI 875
            D  SP  LL  LC +ILG+S      E    QQ+QYA+R+IGS FA     DEF V+++IK+ L RQ RE DAA+FSELH KL S  +LKN++ ILYLL +L+ DP+ +                     T Y+     TL     + +  +  S  +  SS      +   S P P   S  P  G  N+A  +G   R              L + ++ ++   Q  S     +             V+  +++       G   E+TE  L+RD+LYVFQGI+G+ I+ + T   YK+     +S  +RD   +L+ELGWL  +++++   R+ D++ GLVGQSFCAA+ +EL EYYRL++VL  Q   ED    N+   S LTLRRL++WTYDP +R+K LA LVD C+G+KGG L SA++++T+TGDP++  LV+HIL +VSHP+ S + RWI++GEL+D Y+EFFVA+DP V+ ++LW+DKY++RK M+PSF+  + + K+L IGKSINF+  VC D++P     A+  S    +S  D      DL + A    I+  Y  TSK+LLDVL ++Y LLDH++AMRRYLLLGQGDFIRHLMDLL+P+LVRPA +LY HNLTG+LE A+RATNAQFD PE L+RLD RLLE+SPGD GWDVFSLDYHVDGPI+TVFT E + HYLR+FNFLWRAKRMEY LT I K  M +++ L+ +PE S ++H    L +EMVHFIHQMQY+ITFEVLEC W+EL  K+ +A+DLDH+I AH+ FL  +++R L+D++SRA+L QLRA+FD II+ Q+ Q+ +Y +A+ EL+ R   E+K +Q+  EG WG+T  +   + KR  EFK++ +P   +Q+R+L   Y   V +F++
Sbjct:    5 DQKSPNVLLQNLCCRILGRS------EADVAQQFQYAVRVIGSNFAPTVERDEFLVAEKIKKELIRQRREADAALFSELHRKLHSQGVLKNKWSILYLLLSLSEDPRRQPSKVSSYATLFAQALPRDAHSTPYYYARPQTLPLSYQDRSAQSAQSSGSVGSSGISSIGLCALSGPAPAPQSLLP--GQSNQAPGVGDCLRQQ------------LGSRLAWTLTANQPSSQATTSKGV--------PSAVSRNMTRSRREGDTGGTMEITEAALVRDILYVFQGIDGKNIKMNNTENCYKVEGKANLSRSLRDTAVRLSELGWLHNKIRRYTDQRSLDRSFGLVGQSFCAALHQELREYYRLLSVLHSQLQLEDDQGVNLGLESSLTLRRLLVWTYDPKIRLKTLAALVDHCQGRKGGELASAVHAYTKTGDPYMRSLVQHILSLVSHPVLSFLYRWIYDGELEDTYHEFFVASDPTVKTDRLWHDKYTLRKSMIPSFMTMDQSRKVLLIGKSINFLHQVCHDQTPTTKMIAVTKS---AESPQDAADLFTDLEN-AFQGKIDAAYFETSKYLLDVLNKKYSLLDHMQAMRRYLLLGQGDFIRHLMDLLKPELVRPATTLYQHNLTGILETAVRATNAQFDSPEILRRLDVRLLEVSPGDTGWDVFSLDYHVDGPIATVFTRECMSHYLRVFNFLWRAKRMEYILTDIRKGHMCNAKLLRNMPEFSGVLHQCHILASEMVHFIHQMQYYITFEVLECSWDELWNKVQQAQDLDHIIAAHEVFLDTIISRCLLDSDSRALLNQLRAVFDQIIELQNAQDAIYRAALEELQRRLQFEEKKKQREIEGQWGVTAAEEEEENKRIGEFKES-IPKMCSQLRILTHFYQGIVQQFLV 863

The following BLAST results are available for this feature:

BLAST of TCONS_00036953-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00036953-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
GCP3	0.000e+0	46.52	Gamma-tubulin complex component 3 OS=Homo sapiens ...	[more]

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TCONS_00036953-protein (polypeptide) - C. hemisphaerica