TCONS_00036917-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00036917-protein
Unique NameTCONS_00036917-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length984

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00036917-protein ID=TCONS_00036917-protein|Name=TCONS_00036917-protein|organism=Clytia hemisphaerica|type=polypeptide|length=984bp
MSLIGEDCHYFITSTCTRGNQCCFRHQPAAKTTEQSCPEWIQGKCLNPNC
NLRHIAVDRTGHRNKLTPKVCFYDSQPTGCLNPLCKFVHTKKKAVEPVVI
PNATPLAKPVLENPVAPVNPTPVVAKPVQPTLAAPTIVKQPVSQVVPKLI
PPPAPLHTLQPAIRTPTLINGVLNMVPARGILGANPNQAPQILPPLATHH
GLRQQIAGQPLVNRQPVIVGQPDNNNGLPKTGHFNEQVRLFKEMLSSKQK
QNQNDIKPNAKNNRDYHGDSSDYDYDLEKEERERDRERRNKDKYRKKNKK
ERHGRHKKRSKDDLSKADQEVLYGDYKDVPLDRRHKKGSRESRHASSDSD
VKVKSYEEILREKALRKMIEKKKKEKNFEDDFQDILEAEDSKSSNKKSSS
DGEVVSKGSRNQDVDLESVVFDKEDALEVGVDEDEFDAEVDDKRHSKSRR
SKTRKRSSEKENIEDSSLKSSAPSPTSQEVKTNMKRESGDEELDYNDDLP
ATEDGVLVIPDETTDLTFSVDVTDDLAQELNSEPEERSKHKKKPIKIVKK
IPSVASRISKHTSNDTTRDRRQERSKNKRTIQVVDDESPDHKKEKSEPGK
KTETKKVISLVGKKGTGKNDSASTEEKDAPEVVEVVKIKTFEEIMAEKRK
RKLQKADVVVVSDSDSLESPDKKPFSDSPSKMKGLPSIATVSQPAPPPKT
AAQLRREKLQLAKQEYEKRRKSQQLYQVKSSQAATTKPLDVRTASPVKTP
ITAPTSTETNAAKTIKLTRPTVTAPTKVANAPTTENASGVSVRSFEEIMK
EKSLRKQREMQGQQNKVEAKPIQSFLRRRSLSNQRNQTQPGITTSVSNDS
TKSTEKTVPATTAVIAETETAKETTTMVLPPVAKIIGRRRSSSPLQPGVE
VTKVAPIKIKRKLSSSSSSDLAKSRTQTPPPQVVPTIPAKSDDVFDTLKD
VRANNESSTNGASPIAEETEPLSQASMEDIQEAL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_021806XLOC_021806Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00036917TCONS_00036917Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000571Znf_CCCH
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046872 metal ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 699..719
NoneNo IPR availableCOILSCoilCoilcoord: 277..297
NoneNo IPR availablePFAMPF15663zf-CCCH_3coord: 1..103
e-value: 1.2E-25
score: 89.8
NoneNo IPR availableGENE3D4.10.1000.10coord: 5..60
e-value: 3.1E-6
score: 26.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 648..867
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 908..984
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 246..356
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 386..512
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 528..630
IPR000571Zinc finger, CCCH-typeSMARTSM00356c3hfinal6coord: 31..56
e-value: 6.6
score: 9.7
coord: 67..91
e-value: 42.0
score: 3.4
coord: 3..28
e-value: 0.011
score: 24.9
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 7..29
score: 10.868
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 31..57
score: 8.042

Blast
[Close]
BLAST of TCONS_00036917-protein vs. Swiss-Prot (Human)
Match: ZC11A (Zinc finger CCCH domain-containing protein 11A OS=Homo sapiens GN=ZC3H11A PE=1 SV=3)

HSP 1 Score: 97.8265 bits (242), Expect = 1.072e-20
Identity = 40/110 (36.36%), Postives = 64/110 (58.18%), Query Frame = 0 
Query:    5 GEDCHYFITSTCTRGNQCCFRHQPAAKTTEQSCPEWIQGKCLNPNCNLRHIAVDRTGHRNKLTPKVCFYDSQPTGCLNPLCKFVHTKKKAVEPVVIPNATPLAKPVLENP 114
            GEDC++F  STCT+G+ C FRH  AA   E  C  W +G+C    C  RH+ +D+   R+++    C++++QPTGC    C F H + + V+ + +P +  +   V E+P
Sbjct:    5 GEDCYFFFYSTCTKGDSCPFRHCEAAIGNETVCTLWQEGRCFRQVCRFRHMEIDK--KRSEIP---CYWENQPTGCQKLNCAFHHNRGRYVDGLFLPPSKTVLPTVPESP 109
The following BLAST results are available for this feature:
BLAST of TCONS_00036917-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ZC11A1.072e-2036.36Zinc finger CCCH domain-containing protein 11A OS=... [more]
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