TCONS_00036467-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00036467-protein
Unique NameTCONS_00036467-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length961

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00036467-protein ID=TCONS_00036467-protein|Name=TCONS_00036467-protein|organism=Clytia hemisphaerica|type=polypeptide|length=961bp
MAEQENTDGLLDQTKLGRNELKLKRRGPRLWHKWVGLCRRINHSLEKVFT
NLGYIITKRPNLTIILGVLISLALIGGFARYNLIKRAEDLYLPKNSEASK
DLDRVEENFPMSFKSESFIIRPKDANAPLLTEEIFKEALEIHHEIMNIPG
LTDVCIMNERLNTCAVLSPLEFFNFNISNIQNVSQRLHQVLNDSKVLSSD
GRQAYTNFPYYFSYFETTLTTQGMQIVRADALKTDYFVKDPSSKGIYGKL
ESFEDKYVDIMSRKERELDNKGLILLYNFGRSIDISVSDSTQKDIILVPV
ALLLMVIFCGLSLARFRNRILGHFNLALAGVLMLFLAIASAFCFIMLIGA
PYIAFAGVLPFLVLGVGIDDIFIIIDSVDRQHPSIKSNTRIAKALGEVCA
SITMTTLTDLVAFFVSMVTDFPAIRYFCMYAAFSITFCYILVITVFVALL
SFDVKRIEAGQFDVIPCVANNKETTEEVWEEAGESMINKLITKYAEVLML
KPIKAIVIIISIGMTAFGIYGAINVDQSFNQLVLGLKGSAYVKYFGYFET
GFPSGIPVNVVLDAPLNYTDSSLQQQYSNLSQIAIDNNYMESQTFNWMRD
LLSWSKNENITASGRHFYPSLYLFLQENQHYLVDIKFHKNWLQDMLEWSV
VRQKLVTVDNFYQNLEQFLMETPQISAYMKYNFTTDSFLLRSNTKETFKT
CDGECFLIKASRFIILTKANHFSIYRRDAMLSLREDLRTKTDLPVYGVSY
NYIYVEQFVVILPDTIRNLAICASAILLITLPYLVDPKVTFFVFSGFVCL
MFELFGVMYLWDVSLNAISMIIIVMGIGFSVDYSAHIAHAFVICNEKTSE
RRVIYAMRTMGASVTMGGISTFVGVVTTAFAQSELFKIFFKMVFGIVVLG
LIHGLVFLPVFLAVFCNYNVPMTVEVDEEEENGNLSPKKNKMNGEEELLT
MEDIPDTDKML
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_021493XLOC_021493Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00036467TCONS_00036467Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003392Ptc/Disp
IPR000731SSD
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.20.1640.10coord: 250..462
e-value: 3.8E-36
score: 123.8
NoneNo IPR availableGENE3D1.20.1640.10coord: 725..917
e-value: 8.1E-28
score: 96.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 929..961
NoneNo IPR availableSUPERFAMILY82866Multidrug efflux transporter AcrB transmembrane domaincoord: 287..452
NoneNo IPR availableSUPERFAMILY82866Multidrug efflux transporter AcrB transmembrane domaincoord: 733..915
IPR003392Protein patched/dispatchedPFAMPF02460Patchedcoord: 215..915
e-value: 8.4E-87
score: 292.0
IPR000731Sterol-sensing domainPROSITEPS50156SSDcoord: 294..452
score: 36.821

Blast
BLAST of TCONS_00036467-protein vs. Swiss-Prot (Human)
Match: NPC1 (Niemann-Pick C1 protein OS=Homo sapiens GN=NPC1 PE=1 SV=2)

HSP 1 Score: 248.825 bits (634), Expect = 3.129e-68
Identity = 243/970 (25.05%), Postives = 424/970 (43.71%), Query Frame = 0
Query:   45 LEKVFTNLGYIITKRPNLTIILGVLISLALIGGFARYNLIKRAEDLYLPKNSEASKDLDRVEENFPMSFKSESFIIR------------PKDANAPL---LTEEIFKEALEIHHEIMNIPGLTDVCIMNERLNTCAV-LSPLEFFNFNIS--NIQNVSQRLHQVLNDSKVLSSDGRQAYTNFPYYFSYFETTLTTQGMQIVRADALKTDYFVKDPSSKGIYGK-------LESFEDK----------------YVDIMSRKER-------------ELDNKGLILLYNFGRSIDISVSDSTQKDIILVPVALLLMVIFCGLSLARFRN--RIL--GHFNLALAGVLMLFLAIASAFCFIMLIGAPY-IAFAGVLPFLVLGVGIDDIFIIIDSVDRQHPSIKSNT---RIAKALGEVCASITMTTLTDLVAFFVSMVTDFPAIRYFCMYAAFSITFCYILVITVFVALLSFDVKRIEAGQFDVIPCVANNKETTEEVWEEAGESMINKLI-TKYAEVLMLKPIKAIVIIISIGMTAFGIYGAINVDQSFNQLVLGLKGSAYVKYFGYFETGFPSGIPVNVVLDAPLNYTDSSLQQQYSNLSQIAIDNNYMESQTFNWMRDLLSWSKNENITASGRHFYPSLYLFLQENQHYLVDIKFHKNWLQDMLEWSVVRQKLVTVDNFYQNLEQFL-------------------METPQISAYMKY--NFTTDSFLLRSNT------KETFKTCDGECFLIKASRFIILTKANHFSIYRRDAMLSLREDLRTKTD-LPVYGVSYN-------YIYVEQFVVILPDTIRNLAICASAILLITLPYLVDPKVTFFVFSGFVCL-MFELFGVMYLWDVSLNAISMIIIVMGIGFSVDYSAHIAHAFVICNEKTSERRVIYAMRTMGASVTMG-GISTFVGVVTTAFAQSELFKIF-FKMVFGIVVLGLIHGLVFLPVFLA 913
            L ++FT  G    + P   I   ++   A   G     +     DL+   +S+A  + +  +++F   F++E  IIR            P  A+ P    L  +I  + L++   I NI    D    NE +    + L+PL  +N N +  ++ N  Q  H VL+  K    D    Y ++  +F Y            VRA A   D  +      G +G        L  ++D+                Y +   + +R                N  L + +   RSI+  ++  +  D+  V ++  +M ++  L+L   ++  R+L     +L +AG+L++  ++A +      IG P  +    V+PFLVL VG+D+IFI++ +  R    ++  T   ++ + LGEV  S+ +++ ++ VAFF+  ++  PA+  F ++A  ++   ++L IT FV+LL  D+KR E  + D+  CV   ++ T     +A ES + +     Y+ +L+   ++ IVI I +G+ +F I     VD   +Q +     S  V YF        +G PV  VL+   +YT S  Q        +  +N+ +  Q FN        ++ +N T  G  F PS                   +W+ D  +W   +     VDN     +QF                     + PQ   +M++   F +D+   +                 G    + A+ F+        S    DA+   R      T+ + + G +Y        Y++ EQ++ I+ DTI NL +   AI L+T+  L     +  +    + + +  +FGVM+LW +SLNA+S++ +VM  G SV++ +HI  AF +  + +   R   A+  MG+SV  G  ++ F G+V  AFA+S++F+IF F+M   +V+LG  HGL+FLPV L+
Sbjct:  335 LRRLFTRWGSFCVRNPGCVIFFSLVFITACSSGLVFVRVTTNPVDLWSAPSSQARLEKEYFDQHFGPFFRTEQLIIRAPLTDKHIYQPYPSGADVPFGPPLDIQILHQVLDLQIAIENITASYD----NETVTLQDICLAPLSPYNTNCTILSVLNYFQNSHSVLDHKK---GDDFFVYADYHTHFLY-----------CVRAPASLNDTSLLHDPCLGTFGGPVFPWLVLGGYDDQNYNNATALVITFPVNNYYNDTEKLQRAQAWEKEFINFVKNYKNPNLTISFTAERSIEDELNRESDSDVFTVVISYAIMFLYISLALGHMKSCRRLLVDSKVSLGIAGILIVLSSVACSLGVFSYIGLPLTLIVIEVIPFLVLAVGVDNIFILVQAYQRDE-RLQGETLDQQLGRVLGEVAPSMFLSSFSETVAFFLGALSVMPAVHTFSLFAGLAVFIDFLLQITCFVSLLGLDIKRQEKNRLDIFCCVRGAEDGTSV---QASESCLFRFFKNSYSPLLLKDWMRPIVIAIFVGVLSFSIAVLNKVDIGLDQSLSMPDDSYMVDYFKSISQYLHAGPPVYFVLEEGHDYTSSKGQNMVCG--GMGCNNDSLVQQIFNA-------AQLDNYTRIG--FAPS-------------------SWIDDYFDWVKPQSSCCRVDNI---TDQFCNASVVDPACVRCRPLTPEGKQRPQGGDFMRFLPMFLSDNPNPKCGKGGHAAYSSAVNILLGHGTRVGATYFMTYHTVLQTSADFIDALKKARLIASNVTETMGINGSAYRVFPYSVFYVFYEQYLTIIDDTIFNLGVSLGAIFLVTMVLLGCELWSAVIMCATIAMVLVNMFGVMWLWGISLNAVSLVNLVMSCGISVEFCSHITRAFTVSMKGSRVERAEEALAHMGSSVFSGITLTKFGGIVVLAFAKSQIFQIFYFRMYLAMVLLGATHGLIFLPVLLS 1249          
The following BLAST results are available for this feature:
BLAST of TCONS_00036467-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NPC13.129e-6825.05Niemann-Pick C1 protein OS=Homo sapiens GN=NPC1 PE... [more]
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