TCONS_00036363-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00036363-protein
Unique NameTCONS_00036363-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length234

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00036363-protein ID=TCONS_00036363-protein|Name=TCONS_00036363-protein|organism=Clytia hemisphaerica|type=polypeptide|length=234bp
MFTVEKFQKYLHIVCYFLIMIFEITVLSFLWFTLYLMLRVLSGKPEEWCN
RTLTLLHSLVICRMIEYSAYTDGNPLHRIGGTNTVMEEKILMFACSYFIF
DTIWLLFVKSDEDPLILAHHAVGVLMLPLSHWYGSSGAEICVALWGGELT
NPFLQYRFYLKYYTMQGSRLAFWNDFVFAVVFLIIRVIFFTVLCYQFMVA
PKTHTLIKAFGLLFYFVGLSWSYKIIGFIQRKLM
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_021409XLOC_021409Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00036363TCONS_00036363Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006634TLC-dom
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006634TRAM/LAG1/CLN8 homology domainSMARTSM00724lag1_27coord: 43..234
e-value: 0.0029
score: 16.7
IPR006634TRAM/LAG1/CLN8 homology domainPFAMPF03798TRAM_LAG1_CLN8coord: 47..219
e-value: 3.1E-15
score: 56.3
IPR006634TRAM/LAG1/CLN8 homology domainPROSITEPS50922TLCcoord: 43..234
score: 21.054

Blast
[Close]
BLAST of TCONS_00036363-protein vs. Swiss-Prot (Human)
Match: TM136 (Transmembrane protein 136 OS=Homo sapiens GN=TMEM136 PE=2 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 2.684e-24
Identity = 66/208 (31.73%), Postives = 105/208 (50.48%), Query Frame = 0 
Query:   31 WFTLYLMLRVLSG-KPEEWCNRTLTLLHSLVICRMIEYSAYTDGN-PLHRIGGTNTVMEEKILMFACSYFIFDTIWLLFVKSDEDPLILAHHAVGVLMLPLSHWYGSSGAEICVALWGGELTNPFLQYRFYLK----YYTMQGSRLAFWNDFVFAVVFLIIRVIFFTVLCYQFMVAPKTHTLIKAFGLLFYFVGLSWSYKIIGFIQRK 232
            W +LY+    L+  +  EW  R +T  H ++   +  Y  + DG  P    G  NT ++  +L     YFIFD  W ++ +S E  L+LAHH + +L + ++   G SG E+   L+G ELTNP LQ R++L+    Y++  G  +    DF+F  +F  +R+     L +  MV+P     +KA G+  Y V   + + I  F  RK
Sbjct:   16 WLSLYISFCHLNKHRSYEWSCRLVTFTHGVLSIGLSAYIGFIDGPWPFTHPGSPNTPLQVHVLCLTLGYFIFDLGWCVYFQS-EGALMLAHHTLSILGIIMALVLGESGTEVNAVLFGSELTNPLLQMRWFLRETGHYHSFTGDVV----DFLFVALFTGVRIGVGACLLFCEMVSPTPKWFVKAGGVAMYAVSWCFMFSIWRFAWRK 218
The following BLAST results are available for this feature:
BLAST of TCONS_00036363-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TM1362.684e-2431.73Transmembrane protein 136 OS=Homo sapiens GN=TMEM1... [more]
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