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Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00036219-protein ID=TCONS_00036219-protein|Name=TCONS_00036219-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1384bp
MNMPKKDESISEQHPETPNKKKKKKKKNSKRQTGQKSKDSSTKEKDNVSN
VESHSKMKDLSQSKDSRDTKDSDVDPIIVVLIESQTEEDTRILSEDLSQA
VCNVNKDKDPAVLIEERMKENTRDKVVEDLSEAVCSVNKSKPKKRKDHAN
EEVTPIAKTKKNKKKPVEKNIFITQVPVSQMTLPPSETSQDETEVEMTQP
VSIDLSLIDKTLSSDTTTNRSKDSNSSSVVFVADHSIKEDNQEYSQRKEK
SQNETNLNEMSEVFEPNKSVTLKMKKSKWEKQPTKDVENVSMEEKKKNKV
KSDLHGTSPQNKTVFDDKDFQSQIKASTKSAEKLKDKKSSKRKSMKNRLS
AGKTIDFKERKKTNVNSSKLFDLSDEENTEKTNSNLPKSAKRRKISEKQT
ENAKDSSSKSLDLSDVENAIETSSNPPKSAKRKKNSRKQTEKAKDSSNSS
DEKNAIETSSNPPKSARKKNTRKQTEKAKDSSNSSDEKITKKDTSNPSKS
AKRRKNSKKRTEEAAQYTVSSASSDDDSSDADSDTIRKQVLEKHKSLLSS
SLPKARLLVNDRSTMNTESSQDELYDQTVRKENKAAKYPTITLKDLEARM
GKKKSQPKSNKINKKKRKKRSSSSSRSSDSDNESDHTEKKDCNNKETTDK
NKRINRSTKQASLSSSSDDKIITITKKIDKTNDKQSTSKNKSSKQSTVVA
SPTSSSSSSDSENEVLAKKMNTNQSQSSKTKQSKQTTSSSSSSDSENEVL
SKKMNTNQSQSSKTKQSKQTTSSSSSSDSENELLSKKKNTNQSQSSKTKQ
SKQTTSSSSSSDSENKVLSKKMNTNQSQSSKTKQSKQTISSSSSSDSENK
VLAKKMNTNQSQSNKTNKSKQTTSSNSLSDSEDEVSVNNVQRKHMKTTKK
SPSSADQDVIVSDNAASSKNVSEKTNEKLKKTNKKQTKTLDSNKNKRRHS
TSSSSDSDSSNSEPLKKVTKTKRKSAGTGDTTSIITTESSEDEFYNKLLK
QTKKNKDADDDSSSEEPDIEYSELLDKLHEYSQRITDSRENERTGNKHGN
ETPFGRTSIDKSITDVSRNNELYKSKVERHPDLDKYDITIPKLMEMGVSI
ATGSWSNYELYILFLNIKNAKVKFKIDNFKESYLSGDAKTEKVVSELCKN
ILRRRRTIRDKLDEIFVQTPTGEKKSTYSEEESKQLLELHKKYKGEWKTI
AEKLDRSIKSVKQRYKLLQKQGMGTTKMKPKAFTDEEDEHLLRLVKECKD
QKLTIRSGKLPWTLIAEKLESGRDSSTVRARFTLLASKTVKTAKPFLSKR
QRFALIINVLKVLVSNNQDDTNDVNWEKVKQAVKYSGQPDNLAREFKGYM
KTHFLRKKIPAKSNSERLNHMLKNGLPKRKPKEP Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003677 | DNA binding |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003677 |
DNA binding |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | COILS | Coil | Coil | coord: 926..946 |
| None | No IPR available | COILS | Coil | Coil | coord: 1021..1041 |
| None | No IPR available | COILS | Coil | Coil | coord: 1201..1221 |
| None | No IPR available | GENE3D | 1.10.10.60 | | coord: 1222..1338
e-value: 1.9E-7
score: 30.6 |
| None | No IPR available | GENE3D | 1.10.10.60 | | coord: 1170..1221
e-value: 3.0E-8
score: 32.8 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 137..1061 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..76 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1363..1384 |
| IPR001005 | SANT/Myb domain | SMART | SM00717 | sant | coord: 1229..1288
e-value: 0.02
score: 24.1
coord: 1174..1221
e-value: 8.9E-9
score: 45.2 |
| IPR001005 | SANT/Myb domain | PFAM | PF00249 | Myb_DNA-binding | coord: 1176..1216
e-value: 5.2E-8
score: 32.8 |
| IPR017930 | Myb domain | PROSITE | PS51294 | HTH_MYB | coord: 1170..1223
score: 10.886 |
| IPR017877 | Myb-like domain | PROSITE | PS50090 | MYB_LIKE | coord: 1225..1286
score: 6.458 |
| IPR009057 | Homeobox domain-like | SUPERFAMILY | 46689 | Homeodomain-like | coord: 1176..1220 |
| IPR009057 | Homeobox domain-like | SUPERFAMILY | 46689 | Homeodomain-like | coord: 1206..1291 |
Blast
The following BLAST results are available for this feature:
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