TCONS_00035358-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00035358-protein
Unique Name	TCONS_00035358-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	114

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00035358-protein ID=TCONS_00035358-protein|Name=TCONS_00035358-protein|organism=Clytia hemisphaerica|type=polypeptide|length=114bp
MNTPIMDQSYQSYGGMDRPLFGETNKKETYIHYALGILTVVAVVAVVLTS
FLYKLIVVHIIFGIVIIMVCVSNVVLIYWYREGDLQPKFRALIYYNSLVI
ILLCIVAFCIICRI

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_020651	XLOC_020651	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00035358	TCONS_00035358	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR022564	DUF2678

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022564	Protein of unknown function DUF2678	PFAM	PF10856	DUF2678	coord: 10..107 e-value: 1.7E-26 score: 92.3
IPR022564	Protein of unknown function DUF2678	PRODOM	PD456474		coord: 8..107 e-value: 1.0E-11 score: 162.0

Blast

[Close]

BLAST of TCONS_00035358-protein vs. Swiss-Prot (Human)
Match: TM243 (Transmembrane protein 243 OS=Homo sapiens GN=TMEM243 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.583e-22
Identity = 41/103 (39.81%), Postives = 69/103 (66.99%), Query Frame = 0

Query:    8 QSYQSYGGMDRPLFGETNKKETYIHYALGILTVVAVVAVVLTSFLYKLIV---VHIIFGIVIIMVCVSNVVLIYWYREGDLQPKFRALIYYNSLVIILLCIVA 107
            ++Y + G  +RPLFGET+ K+  I+  +G LT + ++  ++++F++  +    ++I F + I +  ++  +LIYWYR+GDL+PKFR LIYY    II+LCI A
Sbjct:    7 RTYGTSGLDNRPLFGETSAKDRIINLVVGSLTSLLILVTLISAFVFPQLPPKPLNIFFAVCISLSSITACILIYWYRQGDLEPKFRKLIYYIIFSIIMLCICA 109

The following BLAST results are available for this feature:

BLAST of TCONS_00035358-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00035358-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
TM243	1.583e-22	39.81	Transmembrane protein 243 OS=Homo sapiens GN=TMEM2...	[more]

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TCONS_00035358-protein (polypeptide) - C. hemisphaerica