TCONS_00035218-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00035218-protein
Unique NameTCONS_00035218-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length439

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00035218-protein ID=TCONS_00035218-protein|Name=TCONS_00035218-protein|organism=Clytia hemisphaerica|type=polypeptide|length=439bp
MGQNQSGPGGGRGKKDDKDKKKKYEPPIPTRVGKKAKKNRGPDAANKLPV
VTPHRNCRLKLLKLERIKDFLLMEEEFIQNQERLKPQEEKHEEERSKVDD
LRGTPMSVGSLEEIIDDNHAIVSTSVGSEHYVSMLSFVDKDLLEPGCSVL
LNHKVHAVIGVLGDDTDPMVSVMKLDKAPQESYADIGGLDKQIQEIKESV
ELPLTHPELYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVV
GSELIQKYLGDGPKLVRELFRVAEEHSPSIVFIDEIDAVGTKRYDSNSGG
EREIQRTMLELLNQLDGFDGRGDVKVIMATNRIDSLDPALIRPGRIDRKI
EFPLPDQKTKRRIFGIHTNRMTLSKDVDLEEYILAKDDLSGADIKAICTE
AGLLALRERRMKVTNEDFKKAKENVLYRKQEGTPEGLYL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_020545XLOC_020545Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00035218TCONS_00035218Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003593AAA+_ATPase
IPR003959ATPase_AAA_core
IPR00593726S_Psome_P45
IPR003960ATPase_AAA_CS
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005524ATP binding
GO:0016787hydrolase activity
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
Vocabulary: Biological Process
TermDefinition
GO:0030163protein catabolic process
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0030163 protein catabolic process
cellular_component GO:0005737 cytoplasm
molecular_function GO:0005524 ATP binding
molecular_function GO:0016787 hydrolase activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003593AAA+ ATPase domainSMARTSM00382AAA_5coord: 217..356
e-value: 2.3E-22
score: 90.3
NoneNo IPR availableGENE3D3.40.50.300coord: 170..360
e-value: 7.9E-59
score: 197.9
NoneNo IPR availableGENE3D1.10.8.60coord: 361..428
e-value: 3.6E-19
score: 68.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 83..103
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..49
NoneNo IPR availableCDDcd00009AAAcoord: 187..354
e-value: 6.32993E-29
score: 109.543
IPR003959ATPase, AAA-type, corePFAMPF00004AAAcoord: 221..354
e-value: 1.2E-42
score: 145.4
IPR00593726S proteasome subunit P45TIGRFAMTIGR01242TIGR01242coord: 77..425
e-value: 3.9E-140
score: 465.1
IPR003960ATPase, AAA-type, conserved sitePROSITEPS00674AAAcoord: 324..342
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 179..433

Blast
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BLAST of TCONS_00035218-protein vs. Swiss-Prot (Human)
Match: PRS4 (26S proteasome regulatory subunit 4 OS=Homo sapiens GN=PSMC1 PE=1 SV=1)

HSP 1 Score: 763.066 bits (1969), Expect = 0.000e+0
Identity = 373/416 (89.66%), Postives = 402/416 (96.63%), Query Frame = 0 
Query:   24 YEPPIPTRVGKKAKKNRGPDAANKLPVVTPHRNCRLKLLKLERIKDFLLMEEEFIQNQERLKPQEEKHEEERSKVDDLRGTPMSVGSLEEIIDDNHAIVSTSVGSEHYVSMLSFVDKDLLEPGCSVLLNHKVHAVIGVLGDDTDPMVSVMKLDKAPQESYADIGGLDKQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHSPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDGRGDVKVIMATNRIDSLDPALIRPGRIDRKIEFPLPDQKTKRRIFGIHTNRMTLSKDVDLEEYILAKDDLSGADIKAICTEAGLLALRERRMKVTNEDFKKAKENVLYRKQEGTPEGLYL 439
            YEPP+PTRVGKK KK +GPDAA+KLP+VTPH  CRLKLLKLERIKD+LLMEEEFI+NQE++KP EEK EEERSKVDDLRGTPMSVG+LEEIIDDNHAIVSTSVGSEHYVS+LSFVDKDLLEPGCSVLLNHKVHAVIGVL DDTDP+V+VMK++KAPQE+YADIGGLD QIQEIKESVELPLTHPE YEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEH+PSIVFIDEIDA+GTKRYDSNSGGEREIQRTMLELLNQLDGFD RGDVKVIMATNRI++LDPALIRPGRIDRKIEFPLPD+KTK+RIF IHT+RMTL+ DV L++ I+AKDDLSGADIKAICTEAGL+ALRERRMKVTNEDFKK+KENVLY+KQEGTPEGLYL
Sbjct:   25 YEPPVPTRVGKKKKKTKGPDAASKLPLVTPHTQCRLKLLKLERIKDYLLMEEEFIRNQEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKRIFQIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKENVLYKKQEGTPEGLYL 440
The following BLAST results are available for this feature:
BLAST of TCONS_00035218-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PRS40.000e+089.6626S proteasome regulatory subunit 4 OS=Homo sapien... [more]
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