TCONS_00034998-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00034998-protein
Unique NameTCONS_00034998-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length368

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00034998-protein ID=TCONS_00034998-protein|Name=TCONS_00034998-protein|organism=Clytia hemisphaerica|type=polypeptide|length=368bp
SGILNGTKSQQGHQLLKTWFLRPSTDLKTLEERQKCISFFTQTRNMEALN
TLQDCLKNTKNIMRILGKMKSCGINVRDWQHLYKTIFHAICIGDICKGIS
KDLHIIQEINETFSKELLSLGNLIKHIIDFEESAFLQHFVVKTGVDEELD
ERKRTFDGIPNLMTKVAQSELSKLNRSITKCSVTYLPQASQNYIPQQVTN
HNESNKVVLDNNTENASPEDTFTQNVDPANHVASSNTCESDGEYEDDVVG
TITYATPVINIFISAIISIGLISIGLYTLFNSFCPDLFNGFWQEPEPTTM
DTILEYCQDAIDYVITMVTMLTQNATVAFSWFWKQPEPTAYEKFTIFWEQ
VFICIATNLQMLANQIAA
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_020375XLOC_020375Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00034998TCONS_00034998Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007696DNA_mismatch_repair_MutS_core
Vocabulary: Molecular Function
TermDefinition
GO:0030983mismatched DNA binding
GO:0005524ATP binding
Vocabulary: Biological Process
TermDefinition
GO:0006298mismatch repair
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006298 mismatch repair
molecular_function GO:0005524 ATP binding
molecular_function GO:0030983 mismatched DNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007696DNA mismatch repair protein MutS, coreSMARTSM00533DNAendcoord: 2..293
e-value: 0.0033
score: -20.4
IPR007696DNA mismatch repair protein MutS, corePFAMPF05192MutS_IIIcoord: 2..166
e-value: 1.2E-17
score: 64.6
IPR007696DNA mismatch repair protein MutS, coreSUPERFAMILY48334DNA repair protein MutS, domain IIIcoord: 2..186
NoneNo IPR availableGENE3D1.10.1420.10coord: 125..218
e-value: 4.7E-10
score: 39.1
NoneNo IPR availableGENE3D1.10.1420.10coord: 1..124
e-value: 2.5E-22
score: 79.2

Blast
[Close]
BLAST of TCONS_00034998-protein vs. Swiss-Prot (Human)
Match: MSH5 (MutS protein homolog 5 OS=Homo sapiens GN=MSH5 PE=1 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.599e-38
Identity = 70/186 (37.63%), Postives = 107/186 (57.53%), Query Frame = 0 
Query:    2 GILNGTKSQQGHQLLKTWFLRPSTDLKTLEERQKCISFFTQTRNMEALNTLQDCLKNTKNIMRILGKMKSCGINVRDWQHLYKTIFHAICIGDICKGISKDLHIIQEINETFSKELLSLGNLIKHIIDFEESAFLQHFVVKTGVDEELDERKRTFDGIPNLMTKVAQSELSKLNRSITKCSVTYLP 187
            GILN    + G +LL+ WF RP+ DL  L  R   I FF   +N++    L   L + KN+  IL +MK     V DWQ LYKT++ A+ + D C+ + + + + ++I + FS +L  + +LI  ++DFE S     F V   +D E+DE+KR   G+P+ +T+VA+ EL  L+  I  CSV Y+P
Sbjct:  256 GILNRCHCKWGEKLLRLWFTRPTHDLGELSSRLDVIQFFLLPQNLDMAQMLHRLLGHIKNVPLILKRMKLSHTKVSDWQVLYKTVYSALGLRDACRSLPQSIQLFRDIAQEFSDDLHHIASLIGKVVDFEGSLAENRFTVLPNIDPEIDEKKRRLMGLPSFLTEVARKELENLDSRIPSCSVIYIP 441
The following BLAST results are available for this feature:
BLAST of TCONS_00034998-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MSH52.599e-3837.63MutS protein homolog 5 OS=Homo sapiens GN=MSH5 PE=... [more]
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