TCONS_00034959-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00034959-protein
Unique Name	TCONS_00034959-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	500

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00034959-protein ID=TCONS_00034959-protein|Name=TCONS_00034959-protein|organism=Clytia hemisphaerica|type=polypeptide|length=500bp
VFLEFSLKFRVLLQVGIESRKILLKMWIRFLSIFFILIRFGSGMITEKEI
TRIYREALKNYEKRSVPIRDGKPVEVRMRISINNMVPRKKSPMHFHMDFY
VTLFWEDYRLAFNHTENYTNHKNNVDYLPYDVHLSEKIWTPNLYLVESKF
GWKNDVPQPNVMIYLYPNGTVGFNFRLNVGLYCAMQMRYFPFDKQHCQMT
IETYSYNSGYVKLKWSIVEQVKKLHITDFAKVEIHKTEKPDVDYGHIGKW
DQLILKLTFYRNSNLYLVRDFFPCFLIVSLSWINFWVTHRSTPARVALGI
TTVLTIVTMTNSVRSQAPSSGLFRCIDVYMLCCNLFVFAALGEAALVGMT
APSEKHANEKEKDEKEKAKEKTNKDKKKAQKVNDNPLSFDNPVFKRTESV
VNNGNGIHSNHQNGDMTTKTKLRTRSIFRNSKNAPEKEAKPKKTFNPLLT
NIKKVGPVYFYTQDVHIVDKISRVLFPVLFILFNVLFFFVIHMVNEDTTI

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_020352	XLOC_020352	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00034959	TCONS_00034959	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR006201	Neur_channel
IPR006028	GABAA/Glycine_rcpt
IPR006202	Neur_chan_lig-bd
IPR006029	Neurotrans-gated_channel_TM
IPR018000	Neurotransmitter_ion_chnl_CS

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

Vocabulary: **Biological Process**
Term	Definition
GO:0006811	ion transport

Vocabulary: **Molecular Function**
Term	Definition
GO:0005216	ion channel activity
GO:0005230	extracellular ligand-gated ion channel activity

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006811	ion transport
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005230	extracellular ligand-gated ion channel activity
molecular_function	GO:0005216	ion channel activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 355..385
None	No IPR available	GENE3D	1.20.58.390		coord: 268..499 e-value: 3.8E-36 score: 123.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 353..383
IPR006201	Neurotransmitter-gated ion-channel	PRINTS	PR00252	NRIONCHANNEL	coord: 480..492 score: 20.61 coord: 183..197 score: 47.93 coord: 137..148 score: 34.84 coord: 96..112 score: 30.18
IPR006028	Gamma-aminobutyric acid A receptor/Glycine receptor alpha	PRINTS	PR00253	GABAARECEPTR	coord: 266..286 score: 40.46 coord: 292..313 score: 52.74 coord: 326..347 score: 48.23 coord: 471..491 score: 39.95
IPR006202	Neurotransmitter-gated ion-channel ligand-binding domain	PFAM	PF02931	Neur_chan_LBD	coord: 51..239 e-value: 4.9E-37 score: 127.4
IPR006202	Neurotransmitter-gated ion-channel ligand-binding domain	GENE3D	2.70.170.10		coord: 41..267 e-value: 2.3E-41 score: 141.1
IPR006202	Neurotransmitter-gated ion-channel ligand-binding domain	SUPERFAMILY	63712	Nicotinic receptor ligand binding domain-like	coord: 50..262
IPR006029	Neurotransmitter-gated ion-channel transmembrane domain	PFAM	PF02932	Neur_chan_memb	coord: 272..488 e-value: 4.2E-21 score: 76.0
IPR006029	Neurotransmitter-gated ion-channel transmembrane domain	SUPERFAMILY	90112	Neurotransmitter-gated ion-channel transmembrane pore	coord: 266..493
IPR018000	Neurotransmitter-gated ion-channel, conserved site	PROSITE	PS00236	NEUROTR_ION_CHANNEL	coord: 183..197

Blast

[Close]

BLAST of TCONS_00034959-protein vs. Swiss-Prot (Human)
Match: GBRR3 (Gamma-aminobutyric acid receptor subunit rho-3 OS=Homo sapiens GN=GABRR3 PE=3 SV=2)

HSP 1 Score: 189.119 bits (479), Expect = 2.474e-54
Identity = 116/428 (27.10%), Postives = 210/428 (49.07%), Query Frame = 0

Query:   67 PIRDGKPVEVRMRISINNMVPRKKSPMHFHMDFYVTLFWEDYRLAFNHTENYTNHKNNVDYLPYDVHLSEKIWTPNLYLVESKFGWKNDVPQPNVMIYLYPNGTVGFNFRLNVGLYCAMQMRYFPFDKQHCQMTIETYSYNSGYVKLKWS----IVEQVKKLHITDFAKVEIHKTEKPDVDYGHIGKWDQLILKLTFYRNSNLYLVRDFFPCFLIVSLSWINFWVTHRSTPARVALGITTVLTIVTMTNSVRSQAPSSGLFRCIDVYMLCCNLFVFAALGEAALVGMTAPSEKHANEKEKDEKEKAKEKTNKDKKKAQKVNDNPLSFDNPVFKRTESVVNNGNGIHSNHQNGDMTTKTKLRTRSIFRNSKNAPEKEAKPKKTFNPLLTNIKKVGPVYFYTQDVHIVDKISRVLFPVLFILFNVLFFFV 490
            P   G PV V + + + ++    ++ M F M FY+  +W+D RL+F  T N +        + +D  L+ KIW P+++ V SK  + +D    N+M+ ++P+G V  + R+ V   C M    FP D Q+C + +E+Y+YN   + L W      +   + + ++ F  +E          Y   G +++L +     R+   ++++ +FP  L+V LSW++FW+  R+ PARV+LGITTVLT+ T+  +V +  P     + +DVY+   +LFVF ++ E A V      E+    K+  +  K     N D  +A       ++FD                 H +  + D T+ +      + R S  +P  ++   K    L  ++ ++       ++ H++D  SR+LFP+++ILFN+ ++ V
Sbjct:   76 PGFGGSPVPVGIDVHVESIDSISETNMDFTMTFYLRHYWKDERLSFPSTANKS--------MTFDHRLTRKIWVPDIFFVHSKRSFIHDTTMENIMLRVHPDGNVLLSLRITVSAMCFMDFSRFPLDTQNCSLELESYAYNEDDLMLYWKHGNKSLNTEEHMSLSQFF-IEDFSASSGLAFYSSTGWYNRLFINFVLRRHVFFFVLQTYFPAILMVMLSWVSFWIDRRAVPARVSLGITTVLTMSTIITAVSASMPQVSYLKAVDVYLWVSSLFVFLSVIEYAAVNYLTTVEE---RKQFKKTGKISRMYNIDAVQA-------MAFD--------------GCYHDSEIDMDQTSLSLNSEDFMRRKSICSPSTDSSRIKRRKSLGGHVGRI-----ILENNHVIDTYSRILFPIVYILFNLFYWGV 465

The following BLAST results are available for this feature:

BLAST of TCONS_00034959-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00034959-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
GBRR3	2.474e-54	27.10	Gamma-aminobutyric acid receptor subunit rho-3 OS=...	[more]

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TCONS_00034959-protein (polypeptide) - C. hemisphaerica