TCONS_00029475-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00029475-protein
Unique NameTCONS_00029475-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length911

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00029475-protein ID=TCONS_00029475-protein|Name=TCONS_00029475-protein|organism=Clytia hemisphaerica|type=polypeptide|length=911bp
MSRFFRAGSSESESEESEEEEIQRPRQAAPASRVYQFSDDEDDTKRVVRS
AKDKRFDILQTSIKNMRNSMKINDLSKIQTEYENLTRDYEKSKTVIAKEG
IPNFFIKILGDLEDYLQQQWEDTNGRKKLSKLNAKALASLRQKLRKYNKD
FETKIKEYKENPSKFDEVEQEEEEEVDNEDKDNDDLDQTDFKPVEKPAKK
TIQDDDYDSDDDFFASDSDDSSSEDELPEGGRKQWGAWMFLKDTTSKDDK
KSGKRDRADKKPKPAAGKKDKDDGWTEVSKSSTKALFPKDTEINHQAVLK
KFHEILAVRGKKGTDRSEQIEYFSELRKISNQHELGEGIDLKLLFTIASA
IMDSTSGADSALRQSLWVKLLDTIKEIFNAIQKNSEVVFEAREDENVEDK
SRPYSLQEDPVTLLEKVDGEFNKILQHCDGHSPEYVAKLKDEIIIVQLID
QLLNLYETKMGDKVSDLCRIYLLRIEHTYYKLDVKILREITTQIMVKEKA
DAEEGEKEEETTEEKAKEDEKETEEQTKEEIADVKLMDKLCKFVYTNGAD
RIRTRAMLCQIFHHAKHDRWYEARDLMLISHLQETIQHSDILTQILFNRT
MVQLGLCAFRHGMIREAHNALQDIQSTGRAKELLAQGLMMKNQDRTPEQE
KIEKRRMLPFHMHINLELIECVYLTSAMLLEIPYMAAHEFDYRRRLISKS
FHYQLRMSDKQALVGPPESMREHIVAASKVMKKGDWKSCKNFILAVSCWE
LFPHSDKVKEMLTRKIQEESLRTYLFTYNKVYDSISMHSLAEMFELAPQI
VHSTISKMIINEELQASWDEPTQTLVLHHGAEPTYLQSLTLQLSDKLNTL
VDHHERILEFKYGPLYNREKNKGDKGQGDNRKGDNRKGDNRKGDNRKGNR
NFHNRRNKDHL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_016817XLOC_016817Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00029475TCONS_00029475Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000717PCI_dom
IPR008905EIF3C_N_dom
IPR011991WHTH_DNA-bd_dom
IPR027516EIF3C
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0031369translation initiation factor binding
GO:0003743translation initiation factor activity
GO:0003723RNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006413translational initiation
Vocabulary: Cellular Component
TermDefinition
GO:0005852eukaryotic translation initiation factor 3 complex
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006413 translational initiation
cellular_component GO:0005852 eukaryotic translation initiation factor 3 complex
molecular_function GO:0005515 protein binding
molecular_function GO:0003723 RNA binding
molecular_function GO:0003743 translation initiation factor activity
molecular_function GO:0031369 translation initiation factor binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 169..189
NoneNo IPR availableCOILSCoilCoilcoord: 137..161
NoneNo IPR availableCOILSCoilCoilcoord: 75..95
NoneNo IPR availableCOILSCoilCoilcoord: 500..529
NoneNo IPR availableSMARTSM00753PINTcoord: 761..850
e-value: 1.7E-14
score: 64.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 868..911
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 499..528
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..43
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 162..281
IPR000717Proteasome component (PCI) domainSMARTSM00088PINT_4coord: 761..850
e-value: 1.7E-14
score: 64.1
IPR000717Proteasome component (PCI) domainPFAMPF01399PCIcoord: 700..828
e-value: 3.2E-14
score: 53.2
IPR008905Eukaryotic translation initiation factor 3 subunit C, N-terminal domainPFAMPF05470eIF-3c_Ncoord: 35..691
e-value: 5.1E-194
score: 645.9
IPR011991Winged helix-turn-helix DNA-binding domainGENE3D1.10.10.10coord: 753..835
e-value: 6.4E-18
score: 64.1
IPR011991Winged helix-turn-helix DNA-binding domainSUPERFAMILY46785"Winged helix" DNA-binding domaincoord: 756..832
IPR027516Eukaryotic translation initiation factor 3 subunit CHAMAPMF_03002eIF3ccoord: 1..901
score: 44.665

Blast
[Close]
BLAST of TCONS_00029475-protein vs. Swiss-Prot (Human)
Match: EIF3C (Eukaryotic translation initiation factor 3 subunit C OS=Homo sapiens GN=EIF3C PE=1 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 7.969e-38
Identity = 95/208 (45.67%), Postives = 135/208 (64.90%), Query Frame = 0 
Query:    1 MSRFFRAGSSESESEESEEEE-IQRPRQAAPASRVYQFSDDEDDTKRVVRSAKDKRFDILQTSIKNMRNSMKINDLSKIQTEYENLTRDYEKSKTVIAKEGIPNFFIKILGDLEDYLQQQWEDTNGRKKLSKLNAKALASLRQKLRKYNKDFETKIKEYKENPSKFDEVEQEEEEE----VDNEDKDNDDLDQTDF--KPVEKPAKKT 201
            MSRFF  GS          EE + +P       +    S+DE+DTKRVVRSAKDKRF+ L   I+ +RN+MKI D++K   E+E L + Y K+K+++ KEG+P F+I+IL DLEDYL + WED  G+KK++K NAKAL++LRQK+RKYN+DFE+ I  YK+NP +  + + E+ EE      +ED+D D +    F  K  E P+ ++
Sbjct:    1 MSRFFTTGSDSESESSLSGEELVTKPVGGNYGKQPLLLSEDEEDTKRVVRSAKDKRFEELTNLIRTIRNAMKIRDVTKCLEEFELLGKAYGKAKSIVDKEGVPRFYIRILADLEDYLNELWEDKEGKKKMNKNNAKALSTLRQKIRKYNRDFESHITSYKQNPEQSADEDAEKNEEDSEGSSDEDEDEDGVSAATFLKKKSEAPSGES 208
The following BLAST results are available for this feature:
BLAST of TCONS_00029475-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
EIF3C7.969e-3845.67Eukaryotic translation initiation factor 3 subunit... [more]
back to top