TCONS_00029278-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00029278-protein
Unique NameTCONS_00029278-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length183

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00029278-protein ID=TCONS_00029278-protein|Name=TCONS_00029278-protein|organism=Clytia hemisphaerica|type=polypeptide|length=183bp
MSSLFSAFSNYLTPPVQVVLLCLTVIAIRAFMVRRRREDEVEEETRQTLP
DMEKRDFTLEELKPYNGVDDPRILIAVNGKVFDVSRGHNNYGPDGPYHVF
AGRDASRGLGTFSIDASTFKDGYDDLSDLNSMQMDSVLEWEMQFQEKYVH
IGRLLKPGEKHCNYKAEESEDESRGGTPNKKED
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_016682XLOC_016682Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00029278TCONS_00029278Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001199Cyt_B5-like_heme/steroid-bd
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001199Cytochrome b5-like heme/steroid binding domainSMARTSM01117Cyt_b5_2coord: 57..155
e-value: 2.5E-19
score: 80.2
IPR001199Cytochrome b5-like heme/steroid binding domainPFAMPF00173Cyt-b5coord: 58..153
e-value: 1.7E-12
score: 47.2
IPR001199Cytochrome b5-like heme/steroid binding domainGENE3D3.10.120.10coord: 53..156
e-value: 1.8E-29
score: 101.8
IPR001199Cytochrome b5-like heme/steroid binding domainSUPERFAMILY55856Cytochrome b5-like heme/steroid binding domaincoord: 49..155
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 164..183

Blast
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BLAST of TCONS_00029278-protein vs. Swiss-Prot (Human)
Match: PGRC2 (Membrane-associated progesterone receptor component 2 OS=Homo sapiens GN=PGRMC2 PE=1 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 1.895e-55
Identity = 85/159 (53.46%), Postives = 109/159 (68.55%), Query Frame = 0 
Query:   16 VQVVLLCLTVIAIRAFMVR------RRREDEVEEETRQTLPDMEKRDFTLEELKPYNGVDDPRILIAVNGKVFDVSRGHNNYGPDGPYHVFAGRDASRGLGTFSIDASTFKDGYDDLSDLNSMQMDSVLEWEMQFQEKYVHIGRLLKPGEKHCNYKAEE 168
            + V L+ L ++      VR             EE    +LP M+KRDF+LE+L+ Y+G  +PRIL+AVNGKVFDV++G   YGP GPY +FAGRDASRGL TF +D    +D YDDLSDLN++QM+SV EWEMQF+EKY ++GRLLKPGE+   Y  EE
Sbjct:   56 LNVALVALVLLGAYRLWVRWGRRGLGAGAGAGEESPATSLPRMKKRDFSLEQLRQYDGSRNPRILLAVNGKVFDVTKGSKFYGPAGPYGIFAGRDASRGLATFCLDKDALRDEYDDLSDLNAVQMESVREWEMQFKEKYDYVGRLLKPGEEPSEYTDEE 214
The following BLAST results are available for this feature:
BLAST of TCONS_00029278-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PGRC21.895e-5553.46Membrane-associated progesterone receptor componen... [more]
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