TCONS_00028802-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00028802-protein
Unique Name	TCONS_00028802-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	272

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00028802-protein ID=TCONS_00028802-protein|Name=TCONS_00028802-protein|organism=Clytia hemisphaerica|type=polypeptide|length=272bp
MKKIIFFIQILVVLGSTSSISEFGNEEAVLDAKSSQKKTLAESDSSTCQP
CRKGRDGRDGLNGLPGRDGEDGCPGLAGRDGLPGATGPEGPQGIQGRPGS
NGTKGDQGVPGKDGKNGINGAPGVNGKPGLPGPPGKDGSIGGRNFKQCAW
DFTSSKDSGLLKACIFTKSKTDSYLMVTISSNVYQGKARACSRWFVTFDG
KECSPHPIDHVFYRGYKGQSEYIPFTMNGVCKINKSGIVSVGFNVGKCKA
ITNIGDAYTGFRSVTRIVIEEL

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_016334	XLOC_016334	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00028802	TCONS_00028802	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR008160	Collagen

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.160.20.50		coord: 41..150 e-value: 2.3E-5 score: 23.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 41..141
IPR008160	Collagen triple helix repeat	PFAM	PF01391	Collagen	coord: 84..141 e-value: 1.2E-9 score: 37.6 coord: 54..104 e-value: 1.4E-8 score: 34.3

Blast

[Close]

BLAST of TCONS_00028802-protein vs. Swiss-Prot (Human)
Match: CTHR1 (Collagen triple helix repeat-containing protein 1 OS=Homo sapiens GN=CTHRC1 PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 7.161e-24
Identity = 69/196 (35.20%), Postives = 99/196 (50.51%), Query Frame = 0

Query:   89 EGPQGIQGR---PGSNGTKGDQGVPGKDGKNGINGAPGVNGKPGLPGPPGKDGSIGGRNFKQCAW-DFTSSKDSGLLKACIFTKSKTDSYLMVTISSNV-YQGKARACSRWFVTFDGKECS-PHPIDHVFY--RGYKGQSEYIPF----TMNGVCKINKSGIVSVGFNVGKCKAITNIGDAYTGFRSVTRIVIEEL 272
            +GP G+ GR   PG+NG  G  G+PG+DG  G  G            P          N+KQC+W       D G +  C FTK +++S L V  S ++  + +   C RW+ TF+G ECS P PI+ + Y  +G    +  I      ++ G+C+   +G+V V   VG C      GDA TG+ SV+RI+IEEL
Sbjct:   57 QGPAGVPGRDGSPGANGIPGTPGIPGRDGFKGEKGECLRESFEESWTP----------NYKQCSWSSLNYGIDLGKIAECTFTKMRSNSALRVLFSGSLRLKCRNACCQRWYFTFNGAECSGPLPIEAIIYLDQGSPEMNSTINIHRTSSVEGLCEGIGAGLVDVAIWVGTCSDYPK-GDASTGWNSVSRIIIEEL 241

The following BLAST results are available for this feature:

BLAST of TCONS_00028802-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00028802-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
CTHR1	7.161e-24	35.20	Collagen triple helix repeat-containing protein 1 ...	[more]

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TCONS_00028802-protein (polypeptide) - C. hemisphaerica