TCONS_00028772-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00028772-protein
Unique NameTCONS_00028772-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length378

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00028772-protein ID=TCONS_00028772-protein|Name=TCONS_00028772-protein|organism=Clytia hemisphaerica|type=polypeptide|length=378bp
MPPTAKEVKARLKKAIDEEGNVLNIEAVNEMTSWLEKITITAEVLQETGI
GLKMNNLRKKVKNNELAKRIKTLIRKWKEDLEKLKTNNGLDTTQGKQNSK
QNNPIGVKRKFNNTEDVKLRTSSPKVHSPSLAQRKHQSSPNRNHTRSPHP
STSSPRVSTSQSANRISSPSTLSPKRSNSRPASRNNVSSPLSKKHARNTP
SPLVTNHTNTKETIPDSRNNNCSLNNQNNKTKANNENGVHDIDKKNSIEV
AKEQFDLNNKDTDTRIQEDRISSIDSGYQGTLSDEFSPTELSPADKFVPI
DKPPEILHSPPPPSPSSFEAIEEENLEVNRKDYVDNPTSPSVVADGVNGL
YDDSDNFCTWTDEVNHGEFAVLPYVILD
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_016316XLOC_016316Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00028772TCONS_00028772Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003617TFIIS/CRSP70_N_sub
IPR017923TFIIS_N
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005634 nucleus
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 67..87
NoneNo IPR availableGENE3D1.20.930.10coord: 3..103
e-value: 1.8E-11
score: 43.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 254..281
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 87..242
NoneNo IPR availableCDDcd00183TFIIS_Icoord: 7..82
e-value: 8.3119E-12
score: 59.6294
IPR003617Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-typeSMARTSM00509TFS2_5coord: 9..83
e-value: 5.8E-9
score: 45.8
IPR017923Transcription factor IIS, N-terminalPFAMPF08711Med26coord: 35..79
e-value: 5.9E-8
score: 32.5
IPR017923Transcription factor IIS, N-terminalPROSITEPS51319TFIIS_Ncoord: 7..84
score: 13.671
IPR017923Transcription factor IIS, N-terminalSUPERFAMILY47676Conserved domain common to transcription factors TFIIS, elongin A, CRSP70coord: 10..89

Blast
[Close]
BLAST of TCONS_00028772-protein vs. Swiss-Prot (Human)
Match: MED26 (Mediator of RNA polymerase II transcription subunit 26 OS=Homo sapiens GN=MED26 PE=1 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 6.594e-16
Identity = 43/106 (40.57%), Postives = 64/106 (60.38%), Query Frame = 0 
Query:    2 PPTAKEVKARLKKAIDEEGNVLNIEAVNEMTSWLEKITITAEVLQETGIGLKMNNLRKKVKNNELAKRIKTLIRKWKEDLEKLKTN----NGLDTTQGKQNSKQNN 103
            P + ++++ RL +AID + N+ N+ AV E+ S LEK  IT E L+ET +G  +N++RKK KN ELAKR K L+R W++ +E    +     GL    G  N   +N
Sbjct:    5 PASPQQIRDRLLQAIDPQSNIRNMVAVLEVISSLEKYPITKEALEETRLGKLINDVRKKTKNEELAKRAKKLLRSWQKLIEPAHQHEAALRGLAGATGSANGGAHN 110
The following BLAST results are available for this feature:
BLAST of TCONS_00028772-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MED266.594e-1640.57Mediator of RNA polymerase II transcription subuni... [more]
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