TCONS_00028604-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00028604-protein
Unique NameTCONS_00028604-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length228

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00028604-protein ID=TCONS_00028604-protein|Name=TCONS_00028604-protein|organism=Clytia hemisphaerica|type=polypeptide|length=228bp
MVDLIDGHKLQSMPPLLEKIRGRLSSRAKSVRVVVLGSHGVGKTALLIRC
LTDQFFNNYVPGKEMAYKHQMVVGTKKINFDICDSNGKNNAMISYADAVL
LVFSVTDKSSFENAKLLVEKVRSLNVNNIPILVVANKIDQCKKRTVTKDD
IDSFSRSLDVLVLERSAAIPTEDIASLFIEMYKLIQASKKQRRDSDPTIN
DPTSKFNLTSIRRLSTSLDENDFIKLVM
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_016223XLOC_016223Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00028604TCONS_00028604Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005225Small_GTP-bd_dom
IPR001806Small_GTPase
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0003924GTPase activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR00449RASTRNSFRMNGcoord: 71..93
score: 19.59
coord: 127..140
score: 38.83
coord: 31..52
score: 39.91
NoneNo IPR availableSMARTSM00175rab_sub_5coord: 31..188
e-value: 4.3E-9
score: 3.8
NoneNo IPR availableSMARTSM00174rho_sub_3coord: 33..164
e-value: 4.0E-5
score: -51.9
NoneNo IPR availableSMARTSM00173ras_sub_4coord: 28..188
e-value: 1.8E-12
score: 57.4
NoneNo IPR availableGENE3D3.30.70.1390coord: 43..89
e-value: 2.4E-9
score: 36.5
NoneNo IPR availableGENE3D3.40.50.300coord: 1..42
e-value: 0.13
score: 10.7
NoneNo IPR availableGENE3D3.40.50.300coord: 90..186
e-value: 1.3E-17
score: 63.1
NoneNo IPR availablePROSITEPS51419RABcoord: 26..225
score: 15.023
IPR005225Small GTP-binding protein domainTIGRFAMTIGR00231TIGR00231coord: 29..156
e-value: 2.6E-14
score: 51.3
IPR001806Small GTPase superfamilyPFAMPF00071Rascoord: 32..185
e-value: 8.1E-26
score: 90.5
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 30..183

Blast
[Close]
BLAST of TCONS_00028604-protein vs. Swiss-Prot (Human)
Match: RERG (Ras-related and estrogen-regulated growth inhibitor OS=Homo sapiens GN=RERG PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.031e-19
Identity = 51/199 (25.63%), Postives = 102/199 (51.26%), Query Frame = 0 
Query:   26 SRAKSVRVVVLGSHGVGKTALLIRCLTDQFFNNYVPGKEMAYKHQMVVGTKKINFDICDSNGKNNAM-----ISYADAVLLVFSVTDKSSFENA---KLLVEKVRSLNVNNIPILVVANKIDQCKKRTVTKDDIDSFSRSLDVLVLERSAAIPTEDIASLFIEMYKLIQ-----ASKKQRRDSDPTINDPTSKFNLTSI 211
            +++  V++ + G  GVGK+AL++R LT +F   Y P  E  Y+HQ  +  + ++ +I D+ G+ + +     + + +  +LV+ +TD+ SFE     K ++++++     N+ +++V NK D    R V+ ++ +  +  L     E SA     +I  +F E+ + ++       K +RR S   +    +K  LT I
Sbjct:    2 AKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQEDTIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIK--KPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRRRRMVQGKTRRRSSTTHVKQAINKM-LTKI 197
The following BLAST results are available for this feature:
BLAST of TCONS_00028604-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RERG1.031e-1925.63Ras-related and estrogen-regulated growth inhibito... [more]
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