TCONS_00028554-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00028554-protein
Unique NameTCONS_00028554-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length151

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00028554-protein ID=TCONS_00028554-protein|Name=TCONS_00028554-protein|organism=Clytia hemisphaerica|type=polypeptide|length=151bp
MFNTEALGEGEETFNNPVALKLQKFAWSDKYRPRKPRFFNRVHTGYEWNK
YNQTHYDQDNPPPKIVQGYKFNIFYPDLIDKTHTPEFTLTQCDEDPDFAI
LRFKTGPPYEDIAFKIVDREWECSNRHGFRCQFYNNIFQLYFHFKRYRYR
R
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_016188XLOC_016188Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00028554TCONS_00028554Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019134Cactin_C
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSMARTSM01050CactinC_cactus_3coord: 27..151
e-value: 7.3E-81
score: 284.6
IPR019134Cactin, C-terminalPFAMPF09732CactinC_cactuscoord: 27..151
e-value: 8.6E-59
score: 196.8

Blast
[Close]
BLAST of TCONS_00028554-protein vs. Swiss-Prot (Human)
Match: CATIN (Cactin OS=Homo sapiens GN=CACTIN PE=1 SV=3)

HSP 1 Score: 238.81 bits (608), Expect = 1.375e-75
Identity = 109/147 (74.15%), Postives = 123/147 (83.67%), Query Frame = 0 
Query:    5 EALGEGEETFNNPVALKLQKFAWSDKYRPRKPRFFNRVHTGYEWNKYNQTHYDQDNPPPKIVQGYKFNIFYPDLIDKTHTPEFTLTQCDEDPDFAILRFKTGPPYEDIAFKIVDREWECSNRHGFRCQFYNNIFQLYFHFKRYRYRR 151
            E +G+ E  F+  + L  + + W+DKYRPRKPRFFNRVHTG+EWNKYNQTHYD DNPPPKIVQGYKFNIFYPDLIDK  TPE+ L  C ++ DFAILRF  GPPYEDIAFKIV+REWE S+RHGFRCQF N IFQL+FHFKRYRYRR
Sbjct:  612 EGMGQDEAQFSVEMPLTGKAYLWADKYRPRKPRFFNRVHTGFEWNKYNQTHYDFDNPPPKIVQGYKFNIFYPDLIDKRSTPEYFLEACADNKDFAILRFHAGPPYEDIAFKIVNREWEYSHRHGFRCQFANGIFQLWFHFKRYRYRR 758
The following BLAST results are available for this feature:
BLAST of TCONS_00028554-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CATIN1.375e-7574.15Cactin OS=Homo sapiens GN=CACTIN PE=1 SV=3[more]
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