TCONS_00028552-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00028552-protein
Unique Name	TCONS_00028552-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	618

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00028552-protein ID=TCONS_00028552-protein|Name=TCONS_00028552-protein|organism=Clytia hemisphaerica|type=polypeptide|length=618bp
MEVLKNDFGGLVSLEFGIPRMLLFSLVIILLSPFTALNTNALSIPTISSF
NYYVDDLPNNRKRIHLECITNSNPRPKITFYKDGIELKDDPRINRAADDQ
MYIHNVTYLQDDGVYKCSVANHHGESYEEKEIKIYVVGNFVAGSRKDDPA
DLLDVIVGLGTRIHCPDHSHSYPVRYLWRMKGKFGVDRIIQEDRSFMYLN
DGKVLFLSLVTKDIVDRVNKAGGVSCLMSINSNLVESRKIKLKIVDEQTD
FDSKPFIHEELPAKQHVLEGKPVTLKCAASGSPLPQVKWYRNGIEININD
SSLYRVNARLPEKFTILKMTDKLEGKYKCQFTNRAGMKASTGDVIVARAP
KISDSSSTTIKRYLKEELKLYCNASGSGNLMFTWVRNGSQLATFQSNERS
IEINKGVLTITNVSYDEQGVYQCFVKSQYGRDSQVFNVLISQRTGSSIGD
KNDSNIHNNNSNNNSSDSSTSSSDSPLELKYIILIGSGGGILVILLCGGI
FMYVRTKKDKEQEQFIPIPSPGYSDYTNSNNSTTRSEGPIYAKPSVHEPM
LGHPASSEMGSMNDSIRGAKMDDPEFLRLMSTLRRDQHNNENPPFEHFYQ
DINNSNDGNQSTTPSTVL

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_016187	XLOC_016187	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00028552	TCONS_00028552	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR003598	Ig_sub2
IPR003599	Ig_sub
IPR013783	Ig-like_fold
IPR013098	Ig_I-set
IPR007110	Ig-like_dom

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003598	Immunoglobulin subtype 2	SMART	SM00408	igc2_5	coord: 363..430 e-value: 8.1E-6 score: 35.3 coord: 268..336 e-value: 8.8E-7 score: 38.5 coord: 59..124 e-value: 9.6E-4 score: 28.4
IPR003599	Immunoglobulin subtype	SMART	SM00409	IG_3c	coord: 357..441 e-value: 1.7E-6 score: 37.6 coord: 262..347 e-value: 3.9E-9 score: 46.3 coord: 53..137 e-value: 17.0 score: 9.6
IPR013783	Immunoglobulin-like fold	GENE3D	2.60.40.10		coord: 247..349 e-value: 1.9E-18 score: 65.9
IPR013783	Immunoglobulin-like fold	GENE3D	2.60.40.10		coord: 350..459 e-value: 1.5E-16 score: 59.8
IPR013783	Immunoglobulin-like fold	GENE3D	2.60.40.10		coord: 57..137 e-value: 3.1E-12 score: 46.0
None	No IPR available	PFAM	PF13927	Ig_3	coord: 350..426 e-value: 6.4E-10 score: 39.4 coord: 60..121 e-value: 1.1E-7 score: 32.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 449..474
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 515..549
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 586..618
None	No IPR available	CDD	cd00096	Ig	coord: 273..341 e-value: 5.6343E-10 score: 55.5731
None	No IPR available	CDD	cd00096	Ig	coord: 368..437 e-value: 2.20941E-9 score: 53.6471
IPR013098	Immunoglobulin I-set	PFAM	PF07679	I-set	coord: 262..342 e-value: 1.0E-12 score: 47.9
IPR007110	Immunoglobulin-like domain	PROSITE	PS50835	IG_LIKE	coord: 255..345 score: 11.951
IPR007110	Immunoglobulin-like domain	PROSITE	PS50835	IG_LIKE	coord: 350..441 score: 12.15
IPR007110	Immunoglobulin-like domain	PROSITE	PS50835	IG_LIKE	coord: 45..133 score: 9.718
IPR007110	Immunoglobulin-like domain	SUPERFAMILY	48726	Immunoglobulin	coord: 61..134
IPR007110	Immunoglobulin-like domain	SUPERFAMILY	48726	Immunoglobulin	coord: 349..440
IPR007110	Immunoglobulin-like domain	SUPERFAMILY	48726	Immunoglobulin	coord: 254..352

Blast

[Close]

BLAST of TCONS_00028552-protein vs. Swiss-Prot (Human)
Match: CNTN2 (Contactin-2 OS=Homo sapiens GN=CNTN2 PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 8.490e-26
Identity = 99/384 (25.78%), Postives = 174/384 (45.31%), Query Frame = 0

Query:   59 NNRKRIHLECITNSNPRPKITFYKDGIELKDDP-RINRAADDQMYIHNVTYLQDDGVYKCSVANHHGESYEEKEIKIYVVGNFVAGSRKDDPADLLDVIVGLGTRIHCPDHSHSYPVRYLWRMKGKFGVDRIIQEDRSFMYLNDGKVLFLSLVTKDI-VDRVNKA--GGVSCL----MSINSNLVESRKIKLKIVDEQTDFDSKPFIHEELPAKQHVLEGKPVTLKCAASGSPLPQVKWYRNGIEININDSSLYRVNARLPEKFTILKMTDKLEGKYKCQFTNRAGMKASTGDVIVARAPK----ISDSSSTTIKRYLKEELKLYCNASGSGNLMFTWVRNGSQLATFQSNERSIEINKGVLTITNVSYDEQGVYQCFVKSQYG 430
            +  +++ L C   ++P     +  +G E+K +P   ++     + I N T  QD GVY+C  +N  G     + I  +    F+    K++  D +    G G  + C   +H   + Y W          ++ E  +F+   DG+  F+S  T ++ + R N +  G  SCL    M  ++  V S+  +L +  E T   + P I    PA+ + L G+ VTL+C A G+P+P++KW +        D SL            I  ++ + EG Y+C+  N  G     G +IV   P+    ISD+ +      +   L+  C A+G       W+RNG  LA+    +  +E+  G L  + +S ++ G+YQC  ++++G
Sbjct:   52 STEEQVLLACRARASPPATYRWKMNGTEMKLEPGSRHQLVGGNLVIMNPTKAQDAGVYQCLASNPVGTVVSREAILRF---GFLQEFSKEE-RDPVKAHEGWGVMLPCNPPAHYPGLSYRW----------LLNEFPNFI-PTDGR-HFVSQTTGNLYIARTNASDLGNYSCLATSHMDFSTKSVFSKFAQLNLAAEDTRLFA-PSIKARFPAETYALVGQQVTLECFAFGNPVPRIKWRK-------VDGSLSPQWTTAEPTLQIPSVSFEDEGTYECEAENSKGRDTVQGRIIVQAQPEWLKVISDTEAD-----IGSNLRWGCAAAGKPRPTVRWLRNGEPLAS----QNRVEVLAGDLRFSKLSLEDSGMYQCVAENKHG 402

The following BLAST results are available for this feature:

BLAST of TCONS_00028552-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00028552-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
CNTN2	8.490e-26	25.78	Contactin-2 OS=Homo sapiens GN=CNTN2 PE=1 SV=1	[more]

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TCONS_00028552-protein (polypeptide) - C. hemisphaerica