TCONS_00028527-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00028527-protein
Unique Name	TCONS_00028527-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	984

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00028527-protein ID=TCONS_00028527-protein|Name=TCONS_00028527-protein|organism=Clytia hemisphaerica|type=polypeptide|length=984bp
MINYFYKKRDLLHHHFGKFYFKYGCFCSTHPILMIAISCTVVILCSLPLS
SFPIFERIIAFMFQRIRVNYITKISPLDGQNPIHQNEVFGYVQQINVNAT
IHGHTILSKEEIVDNILSTNSLLMLDKELREPAEDWNTACMKLHRDPPSM
KALKKRMKFSHSSFHHDLKQRRFYLLECLYVSPNLLYDNGRSIGLDEYSV
GFQELILGYPIQYFKGDLTDNPTQHISIVFTLFLKDNYQTFKENLETNLT
SFGLKNADSAEKKQAYKIKYNFSDDSGPAELLPLGLAYLVVFLYLWFSVA
KFDFIRTRWGLAFAAVMNFVFSFIMAIGVCAYFDALPTNLNVGEIFPYVV
ILIGIENFWIITKSVMTTKKDLSVKERLGIGLGLEGWYITKNLLVEISLL
GFGYISGVKGVQEFSIFALACYLSDFFLQLAFFTPILAVDIRRAEVGLPF
SNRSAWKYALYIDLEKPKGSKNTTEEPTQHGAAVRMAFGLARYRVLQRSV
MVFIIMYFVFIIYHPFHELVNPGPMDLNKLNLNNRDGASQYMSCLTEQDV
ASHKGPIPSWLFLCNKHWPELFNYYFQHLNNKSLVILPELKVSTTLNAED
LVPHIHEPNNWSTWLITFMYETSKPIIAVCAIIVFAVAYKAVNVIQMLLK
ELNTDNDLYTCETHALKVPTSKQFPFKVTKLIVDEQDILVTAYVNGSVYV
WDLYSNSCQYYINRRVRRVYNMAISRSTSFHSLPTPEDAHTKKKEQSQQK
LPRAVWSIAYKSDVLVVGCNKGSVEVYSLESECLQCYHQSNNESGVVSVQ
IISCLRFVIAHKSGIVEFCHIKNARGSRKRANSLPNEESTGQVVEREMEI
SRVVVVSNQPIISMEIALNKVFVASDQGLVKVLRARDDGGIPLQCHIPRD
QEITFLRTEESPEMALIGTSTGTVYVVNAVGQLEKMLNCSEDEVMSITSD
DDYIAVHCYDGCXPLLLMMIILQCIVMMVVLPYG

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_016171	XLOC_016171	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00028527	TCONS_00028527	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000731	SSD
IPR015943	WD40/YVTN_repeat-like_dom
IPR017986	WD40_repeat_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000731	Sterol-sensing domain	PFAM	PF12349	Sterol-sensing	coord: 305..445 e-value: 2.1E-39 score: 134.7
IPR000731	Sterol-sensing domain	PROSITE	PS50156	SSD	coord: 280..439 score: 33.38
IPR015943	WD40/YVTN repeat-like-containing domain	GENE3D	2.130.10.10		coord: 663..963 e-value: 2.5E-19 score: 68.8
None	No IPR available	GENE3D	1.20.1640.10		coord: 235..448 e-value: 5.2E-17 score: 61.3
None	No IPR available	SUPERFAMILY	82866	Multidrug efflux transporter AcrB transmembrane domain	coord: 271..439
IPR017986	WD40-repeat-containing domain	SUPERFAMILY	50978	WD40 repeat-like	coord: 685..963

Blast

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BLAST of TCONS_00028527-protein vs. Swiss-Prot (Human)
Match: SCAP (Sterol regulatory element-binding protein cleavage-activating protein OS=Homo sapiens GN=SCAP PE=1 SV=4)

HSP 1 Score: 217.624 bits (553), Expect = 5.402e-58
Identity = 205/842 (24.35%), Postives = 353/842 (41.92%), Query Frame = 0

Query:   12 LHHHFGKFYFKYGCFCSTHPILMIAISCTVVILCSLPLSSFPIFERIIAFMFQRIRVNYITKISPLDGQN----PIHQNEVF-----GYVQQINVNATIHG-HTILSKEEIVDNILSTNSLLMLDKELREPAEDWNTACMKLHRDPPSMKALKKRMKFSHSSFHHDLKQRRFYLLE--CLYVSPNLLYDNGRS--------IGLD--------EYSVGFQELILGYPIQYFKGDLTDNPTQHISIVFTLFLKDNYQTFKENLETNLTSFGLKNADSAEKKQAYKIKYNFSDDSGPAELLPLGLAYLVVFLYLWFSVAKFDFIRTRWGLAFAAVMNFVFSFIMAIGVCAYFDALPTNLNVGEIFPYVVILIGIENFWIITKSVMTTKKDLSVKERLGIGLGLEGWYITKNLLVEISLLGFGYISGVKGVQEFSIFALACYLSDFFLQLAFFTPILAVDIRRAEV---------------GLPFSNRSAWKYALYIDLEKPKGSKNTTEEPT-----QHGAAVRMAFGLARYRVLQRSVMVFIIMYFVFIIY-----------------HPFHE-LVNPGPMDLNKLNLNNRDGASQYMSC----LTEQDVAS-------------HKGPIPS----------WLFLCNKHWPELFNYYFQHLNNKSLVILPELKVSTTLNAEDLVPHIHEPNNWSTW----LITFMYETSKP-----IIAVCAIIVFAVAYKAV--------------------NVIQMLLKELNTDNDLYTCETHALKVPTSKQFPFKVTKLIVD------EQDILVTAYVNGSVYVWDLYSNSCQYYINRRVRRVYNMAIS 725
            L     + ++ +G  C+++PI +I  +   ++ C  PL   P+        F     +Y     P+D       P  Q E +      YVQQI V +++   H  L   ++  + LS      L +E+R            + RD   +++L++ +    +     L++ R  L E  CL +SP   + N           IG          + S   ++L+ G P +Y    L     + +S   TL  +  +  F  +L   L    L  + +   +    +  +F ++ G AEL+PL   Y+++F Y++FS  K D ++++WGLA AAV+  + S +M++G+C  F   PT LN GEIFPY+V++IG+EN  ++TKSV++T  DL VK R+  GL  E W I KN+  E+ ++  GY + V  +QEF +FA+   +SDFFLQ+ FFT +L++DIRR E+                 P    + ++  L +   +P      T +P+     +    +R+ + LAR R+ QR +M   +++   ++Y                  P  E  + P P+    L  ++ D A          L E   +              H  P+P           W  L  +HWP LF+YY   L  + + +LP + V+  LN  + +   H  +  S W     I   +  + P     + A   + ++ VA   +                    N  Q+             C+ +    P ++  P  +   ++D      +  +LV+  + G V VWD  +  C   I R  R+  +  + 
Sbjct:    7 LREKISRAFYNHGLLCASYPIPIILFTGFCILACCYPLLKLPL-PGTGPVEFTTPVKDY--SPPPVDSDRKQGEPTEQPEWYVGAPVAYVQQIFVKSSVFPWHKNLLAVDVFRSPLSRA--FQLVEEIRN----------HVLRDSSGIRSLEE-LCLQVTDLLPGLRKLRNLLPEHGCLLLSPGNFWQNDWERFHADPDIIGTIHQHEPKTLQTSATLKDLLFGVPGKYSGVSLYTR-KRMVSYTITLVFQHYHAKFLGSLRARLML--LHPSPNCSLRAESLVHVHFKEEIGVAELIPLVTTYIILFAYIYFSTRKIDMVKSKWGLALAAVVTVLSSLLMSVGLCTLFGLTPT-LNGGEIFPYLVVVIGLENVLVLTKSVVSTPVDLEVKLRIAQGLSSESWSIMKNMATELGIILIGYFTLVPAIQEFCLFAVVGLVSDFFLQMLFFTTVLSIDIRRMELADLNKRLPPEACLPSAKPVGQPTRYERQLAV---RPSTPHTITLQPSSFRNLRLPKRLRVVYFLARTRLAQRLIMAGTVVWIGILVYTDPAGLRNYLAAQVTEQSPLGEGALAPMPVPSGMLPPSHPDPAFSIFPPDAPKLPENQTSPGESPERGGPAEVVHDSPVPEVTWGPEDEELWRKLSFRHWPTLFSYYNITLAKRYISLLPVIPVTLRLNPREALEGRHPQDGRSAWPPPGPIPAGHWEAGPKGPGGVQAHGDVTLYKVAALGLATGIVLVLLLLCLYRVLCPRNYGQLGGGPGRRRRGELPCDDYGYAPPETEIVPLVLRGHLMDIECLASDGMLLVSCCLAGHVCVWDAQTGDCLTRIPRPGRQRRDSGVG 825

The following BLAST results are available for this feature:

BLAST of TCONS_00028527-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00028527-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
SCAP	5.402e-58	24.35	Sterol regulatory element-binding protein cleavage...	[more]

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TCONS_00028527-protein (polypeptide) - C. hemisphaerica