TCONS_00028408-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00028408-protein
Unique Name	TCONS_00028408-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	587

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00028408-protein ID=TCONS_00028408-protein|Name=TCONS_00028408-protein|organism=Clytia hemisphaerica|type=polypeptide|length=587bp
MSAIQLEVWDYIIFGLMLLLSSVIGLYHGYQSNKNKRDSKDDYLLAGQSI
SWFPLFISLVASYLSAIALLGIPSEIYTYGGMYIVIMMSYPLFIFQCLVI
YAPIFRRSKVTSANEYLEKRFHPAVRVFAAILFIKEYVLYLAVVLYAPSL
ALQAVAGVQMEISLVTIAVVCTIYTTIGGMKGVIWTDVFQTFIICVGLVV
VVIIGSSEVGGIQNVFEIAERGGRMNILDFNPDPRVRNTFWSFVFGGMFS
AMPVYCVGQMMVQRIMSAKSEKTVRIALLLQIPGLMVIVGLCTLAGWVIY
ANYEKCDLKSSGQVQSNDQILAYFLVNKLHHLKGVPGIFMASLFSGALST
ASSGFNSLAAITYEDIFKKIHGELSPQQAAKVSKIIAFIYGFVVLGVAFL
VNKMGTMVLQLAYAIHGVIGGPSMGMFALGMLVPWSNTVGAFLGCVCGIL
ITTWLAVGAFIFPPDKNILPVSIEQCSIFNSTTMNATIYHQFQPHNDPLT
SYYSVSYLWWGGVGIISSFVFGMIFSAIYRCCVSEEELEETRPSKELLFD
YGYMWRCLTCRCSDSEEFKLQHVDKEEFILNTYHTNE

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_016094	XLOC_016094	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00028408	TCONS_00028408	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001734	Na/solute_symporter

Vocabulary: **Biological Process**
Term	Definition
GO:0006810	transport
GO:0055085	transmembrane transport

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

Vocabulary: **Molecular Function**
Term	Definition
GO:0005215	transporter activity

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055085	transmembrane transport
biological_process	GO:0006810	transport
cellular_component	GO:0016020	membrane
molecular_function	GO:0005215	transporter activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001734	Sodium/solute symporter	TIGRFAM	TIGR00813	TIGR00813	coord: 43..448 e-value: 5.5E-89 score: 297.0
IPR001734	Sodium/solute symporter	PFAM	PF00474	SSF	coord: 43..448 e-value: 5.7E-47 score: 160.4
IPR001734	Sodium/solute symporter	PROSITE	PS50283	NA_SOLUT_SYMP_3	coord: 7..462 score: 53.195
None	No IPR available	CDD	cd11492	SLC5sbd_NIS-SMVT	coord: 9..528 e-value: 0.0 score: 552.091

Blast

[Close]

BLAST of TCONS_00028408-protein vs. Swiss-Prot (Human)
Match: SC5AC (Sodium-coupled monocarboxylate transporter 2 OS=Homo sapiens GN=SLC5A12 PE=2 SV=2)

HSP 1 Score: 380.563 bits (976), Expect = 9.724e-125
Identity = 197/546 (36.08%), Postives = 327/546 (59.89%), Query Frame = 0

Query:    1 MSAIQLEVWDYIIFGLMLLLSSVIGLYHGYQSNKNKRDSKDDYLLAGQSISWFPLFISLVASYLSAIALLGIPSEIYTYGGMYIVIMMSYPLFIFQCLVIYAPIFRRSKVTSANEYLEKRFHPAVRVFAAILFIKEYVLYLAVVLYAPSLALQAVAGVQMEISLVTIAVVCTIYTTIGGMKGVIWTDVFQTFIICVGLVVVVIIGSSEVGGIQNVFEIAERGGRMNILDFNPDPRVRNTFWSFVFGGMFSAMPVYCVGQMMVQRIMSAKSEKTVRIALLLQIPGLMVIVGLCTLAGWVIYANYEKCDLKSSGQVQSNDQILAYFLVNKLHHLKGVPGIFMASLFSGALSTASSGFNSLAAITYEDIFKKIHGELSPQQAAKVSKIIAFIYGFVVLGVAFLVNKMGTMVLQLAYAIHGVIGGPSMGMFALGMLVPWSNTVGAFLGCVCGILITTWLAVGAFIFPPDKNI---LPVSIEQCSIFNSTTMNATIYHQFQPHNDPLTSYYSVSYLWWGGVGIISSFVFGMIFSAIYRCCVSEEELEETRP 543
            M      VWDY++F  +  +SS IG++  +   + K+ +  ++L+ G+ +S+ P+ +SL AS++SA+ +LG PSE+Y +G  ++V  ++Y   I     ++ P+F RS +TS  EYL+ RF+  VR  A +++I + +LY  VV+YAP+LAL  V G  +  S+    +VCT Y T+GG+K V+WTD FQ  ++ VG + V+I GS+  GG  NV E +  G R++I DF+ DP  R+TFW+   GG F+ + +Y V Q  +QR +S K+EK  ++AL   + GL +I+     +G ++Y++++ CD  +SG + + DQ++ YF++     + G+PG+F+A  FSG LST +S  N+LA +T+ED  K     LS + +  +SK +  ++G +   +A   + MG  V+Q + +IHG+ GGP +G+F+LG++ P+ N  GA  G + GI ++ W+A+GAFI+P   +    LP+S +QC   N T     +        D   ++YS+SYL++  VG +   V G+I S I       +  E+ +P
Sbjct:    1 MEVKNFAVWDYVVFAALFFISSGIGVF--FAIKERKKATSREFLVGGRQMSFGPVGLSLTASFMSAVTVLGTPSEVYRFGASFLVFFIAYLFVILLTSELFLPVFYRSGITSTYEYLQLRFNKPVRYAATVIYIVQTILYTGVVVYAPALALNQVTGFDLWGSVFATGIVCTFYCTLGGLKAVVWTDAFQMVVMIVGFLTVLIQGSTHAGGFHNVLEQSTNGSRLHIFDFDVDPLRRHTFWTITVGGTFTWLGIYGVNQSTIQRCISCKTEKHAKLALYFNLLGLWIILVCAVFSGLIMYSHFKDCDPWTSGIISAPDQLMPYFVMEIFATMPGLPGLFVACAFSGTLSTVASSINALATVTFEDFVKSCFPHLSDKLSTWISKGLCLLFGVMCTSMAVAASVMGG-VVQASLSIHGMCGGPMLGLFSLGIVFPFVNWKGALGGLLTGITLSFWVAIGAFIYPAPASKTWPLPLSTDQCIKSNVTATGPPVLSSRPGIAD---TWYSISYLYYSAVGCLGCIVAGVIISLI----TGRQRGEDIQP 536

The following BLAST results are available for this feature:

BLAST of TCONS_00028408-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00028408-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
SC5AC	9.724e-125	36.08	Sodium-coupled monocarboxylate transporter 2 OS=Ho...	[more]

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TCONS_00028408-protein (polypeptide) - C. hemisphaerica