TCONS_00028306-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00028306-protein
Unique NameTCONS_00028306-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length386

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00028306-protein ID=TCONS_00028306-protein|Name=TCONS_00028306-protein|organism=Clytia hemisphaerica|type=polypeptide|length=386bp
MATSSVPGHISSSNSGFVSAQHGTYGFRNNEVGGYDVNFVERANPDYQCP
ICHFTFRDPVQTRDCGHRFCETCLEPILRKSPACCPIDRRQLTRDKVYPD
RACKRTIMQLMVRCYNHGSDCEWTGELNNLQDHLEACQKTEITCENSCGR
TDIARNQMSQHTGVDGDCPLAVVLCRYHDVGCKYKARRVDIDLHYQESME
VHLDFAHSRIRELEVRQENICMNGKFLWKISNYDQLVKQSASKKDKEKLC
SPPFYTGQYGYKLRAEAFLNGLGQGKGSHLSLYVVIMKGEYDAILPWPFK
QNVDFVLIDQDDDKANRQNKVWKLSCERNSDYFQRPNKAKSLGFGCPKFV
SLDTLKSRNYIRDQTIFIKIEVESSDHLIFAPVATH
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_016037XLOC_016037Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00028306TCONS_00028306Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002083MATH/TRAF_dom
IPR001841Znf_RING
IPR008974TRAF-like
IPR012227TNF_rcpt--assoc_TRAF
IPR001293Znf_TRAF
IPR013083Znf_RING/FYVE/PHD
IPR017907Znf_RING_CS
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0008270zinc ion binding
Vocabulary: Biological Process
TermDefinition
GO:0042981regulation of apoptotic process
GO:0007165signal transduction
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042981 regulation of apoptotic process
biological_process GO:0007165 signal transduction
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002083MATH/TRAF domainSMARTSM00061math_3coord: 225..355
e-value: 1.4E-14
score: 64.5
IPR002083MATH/TRAF domainPROSITEPS50144MATHcoord: 223..372
score: 22.181
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 49..88
e-value: 6.7E-4
score: 29.0
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 49..89
score: 11.604
IPR001841Zinc finger, RING-typeCDDcd00162RINGcoord: 48..87
e-value: 1.5344E-9
score: 52.448
IPR008974TRAF-likeGENE3D2.60.210.10coord: 226..380
e-value: 7.1E-38
score: 129.9
IPR008974TRAF-likeSUPERFAMILY49599TRAF domain-likecoord: 223..376
IPR008974TRAF-likeSUPERFAMILY49599TRAF domain-likecoord: 110..161
IPR012227TNF receptor-associated factor TRAFPIRSFPIRSF015614TRAFcoord: 16..165
e-value: 1.0E-33
score: 114.8
coord: 209..380
e-value: 2.9E-63
score: 212.2
coord: 135..219
e-value: 5.2E-11
score: 39.8
NoneNo IPR availablePFAMPF13923zf-C3HC4_2coord: 48..87
e-value: 4.5E-8
score: 32.7
NoneNo IPR availableCDDcd00270MATH_TRAF_Ccoord: 224..373
e-value: 2.22904E-62
score: 198.215
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 43..115
IPR001293Zinc finger, TRAF-typePFAMPF02176zf-TRAFcoord: 133..194
e-value: 1.2E-12
score: 48.2
IPR001293Zinc finger, TRAF-typePROSITEPS50145ZF_TRAFcoord: 133..185
score: 11.946
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 157..195
e-value: 2.1E-4
score: 20.9
coord: 112..156
e-value: 8.1E-13
score: 47.9
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 28..111
e-value: 4.6E-15
score: 54.8
IPR017907Zinc finger, RING-type, conserved sitePROSITEPS00518ZF_RING_1coord: 65..74

Blast
[Close]
BLAST of TCONS_00028306-protein vs. Swiss-Prot (Human)
Match: TRAF4 (TNF receptor-associated factor 4 OS=Homo sapiens GN=TRAF4 PE=1 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 3.840e-50
Identity = 99/305 (32.46%), Postives = 162/305 (53.11%), Query Frame = 0 
Query:   94 RDKVYPDRACKRTIMQLMV------RCYNHGSDCEWTGE---LNNLQDHLEACQKTEITCENSCGRTDIARNQMSQHTGVDGDCPLAVVLCRYHDVGCKYKARRVDIDLHYQESMEVHLDFA-------HSRIREL--EVRQENICMNGKFLWKISNYDQLVKQSASKKDKEKLCSPPFYTGQYGYKLRAEAFLNGLGQGKGSHLSLYVVIMKGEYDAILPWPFKQNVDFVLIDQDDDK-ANRQNKVWKLSCERNSDYFQRPNKAK------SLGFGCPKFVSLDTLKSRNYIRDQTIFIKIEVE 373
            ++ VY +  C   +M+ ++       C      C +  +    + +Q H   C +  + C N CG   +AR  +  H  +   C  A+VLC + D GCK++  ++ +  H +ES++ HL             ++EL  E+ + ++  +G  +WKI +Y + ++++ +K + E   SP FYT +YGYKL+  AFLNG G G+G+HLSLY+ ++ G +D +L WPF + V F L+DQ D   A  Q+       + N   FQ+P   +      SLGFG PKF+S   ++ RNY+RD  +FI+  VE
Sbjct:  162 QESVYCENKCGARMMRRLLAQHATSECPKRTQPCTYCTKEFVFDTIQSHQYQCPRLPVACPNQCGVGTVAREDLPGH--LKDSCNTALVLCPFKDSGCKHRCPKLAMARHVEESVKPHLAMMCALVSRQRQELQELRRELEELSVGSDGVLIWKIGSYGRRLQEAKAKPNLECF-SPAFYTHKYGYKLQVSAFLNGNGSGEGTHLSLYIRVLPGAFDNLLEWPFARRVTFSLLDQSDPGLAKPQHVTETFHPDPNWKNFQKPGTWRGSLDESSLGFGYPKFISHQDIRKRNYVRDDAVFIRAAVE 463

HSP 2 Score: 103.219 bits (256), Expect = 4.433e-24
Identity = 53/153 (34.64%), Postives = 77/153 (50.33%), Query Frame = 0 
Query:   34 GYDVNFVERANPDYQCPICHFTFRDPVQTRDCGHRFCETCLEPILRKSPACCPIDRRQLTRDKVYPDRACKRTIMQLMVRCYNHGSDCEWTGELNNLQDHLEACQKTEITCENSCGRTDIARNQMSQHTGVDGDCPLAVVLCRYHDVGCKYKA 186
            G+D  F+E+      CP+C    R+PVQ   CGHRFC+TCL+  L +    CP D+  L   K+YPD   +  ++ L +RC +    C W+G L +LQ HL  C    I C N C    ++R  +  H  +  DCP   + C +   GC +  
Sbjct:    3 GFDYKFLEKPKRRLLCPLCGKPMREPVQVSTCGHRFCDTCLQEFLSEGVFKCPEDQLPLDYAKIYPDPELEVQVLGLPIRCIHSEEGCRWSGPLRHLQGHLNTCSFNVIPCPNRCP-MKLSRRDLPAH--LQHDCPKRRLKCEF--CGCDFSG 150
The following BLAST results are available for this feature:
BLAST of TCONS_00028306-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TRAF43.840e-5032.46TNF receptor-associated factor 4 OS=Homo sapiens G... [more]
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