TCONS_00028291-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00028291-protein
Unique NameTCONS_00028291-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length153

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00028291-protein ID=TCONS_00028291-protein|Name=TCONS_00028291-protein|organism=Clytia hemisphaerica|type=polypeptide|length=153bp
MFEEKENIEVKSYECNVCGKVFRLASYLRKHLNIHAGSFKCDECGKVYQS
AYTLKRHETLHNKEKKHLYTHAKKKCSECNVCGNVFTIKYRYPLHTKKPS
QFDVCGNCLVDKKDDLQTNVTSKEEDLHPYKCDVCRKYFTDSVEFQLHIR
EHW
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_016030XLOC_016030Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00028291TCONS_00028291Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013087Zinc finger C2H2-typeSMARTSM00355c2h2final6coord: 13..35
e-value: 6.7E-4
score: 29.0
coord: 130..152
e-value: 0.002
score: 27.4
coord: 39..61
e-value: 0.0038
score: 26.5
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 15..35
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 41..61
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 132..152
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 39..66
score: 13.297
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 13..40
score: 13.131
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 130..153
score: 10.408
IPR013087Zinc finger C2H2-typeSUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 11..61
IPR013087Zinc finger C2H2-typeSUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 97..153
NoneNo IPR availableGENE3D2.20.25.10coord: 110..133
e-value: 0.42
score: 10.2
NoneNo IPR availableGENE3D3.30.160.60coord: 49..71
e-value: 5.5E-6
score: 25.8
NoneNo IPR availableGENE3D3.30.160.60coord: 25..48
e-value: 9.1E-16
score: 57.2
NoneNo IPR availableGENE3D2.30.30.380coord: 8..24
e-value: 0.0027
score: 17.3
NoneNo IPR availablePFAMPF00096zf-C2H2coord: 130..152
e-value: 3.6E-4
score: 20.7
coord: 39..61
e-value: 2.6E-4
score: 21.2
coord: 13..35
e-value: 9.0E-6
score: 25.8
NoneNo IPR availableGENE3D3.30.160.60coord: 134..153
e-value: 1.1E-4
score: 21.8
NoneNo IPR availableGENE3D2.10.110.10coord: 72..109
e-value: 4.7E-4
score: 19.8

Blast
[Close]
BLAST of TCONS_00028291-protein vs. Swiss-Prot (Human)
Match: ZN836 (Zinc finger protein 836 OS=Homo sapiens GN=ZNF836 PE=2 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 3.630e-20
Identity = 60/173 (34.68%), Postives = 80/173 (46.24%), Query Frame = 0 
Query:   11 KSYECNVCGKVFRLASYLRKHLNIHAG--SFKCDECGKVYQSAYTLKRHETLHNKEK------------------KHLYTHAKKKCSECNVCGNVFTIKYRYPLHTK-----KPSQFDVCG------NCLVDKKDDLQTNVTSKEEDLHPYKCDVCRKYFTDSVEFQLHIREH 152
            K Y+CN CGKVF   S+L  H  IH G   +KCD+CGK ++    L RH+ +H +EK                  +HL  H  ++  +CNVCG VF       +H +     KP Q + CG      +CL      L+ +   K     PYKC+VC K F DS     H R H
Sbjct:  468 KPYKCNECGKVFSQTSHLVGHRRIHTGEKPYKCDKCGKAFKQGSLLTRHKIIHTREKRYQCGECGKVFSENSCLVRHLRIHTGEQPYKCNVCGKVFNYSGNLSIHKRIHTGEKPFQCNECGTVFRNYSCLA---RHLRIHTGQK-----PYKCNVCGKVFNDSGNLSNHKRIH 632

HSP 2 Score: 77.0258 bits (188), Expect = 3.488e-17
Identity = 51/149 (34.23%), Postives = 71/149 (47.65%), Query Frame = 0 
Query:   11 KSYECNVCGKVFRLASYLRKHLNIHAG--SFKCDECGKVYQSAYTLKRHETLHNKEKKHLYTHAKKKCSECNVCGNVFT----IKYRYPLHT-KKPSQFDVCGNCLVDKKDDLQTNVTSKEEDLHPYKCDVCRKYFTDSVEFQLHIREH 152
            K Y+C VCGK+FR  S L  H   H G   +KC+ECGK +  +Y L  H+ +H  EK +          +CN CG  F     +     +HT +KP Q D+CG   V +++    N         PYKC++C K F+ S     H   H
Sbjct:  272 KPYQCGVCGKIFRQNSDLVNHRRSHTGEKPYKCNECGKSFSQSYNLAIHQRIHTGEKPY----------KCNECGKTFKQGSCLTTHQIIHTGEKPYQCDICGK--VFRQNSNLVNHQRIHTGEKPYKCNICGKSFSQSSNLATHQTVH 408
The following BLAST results are available for this feature:
BLAST of TCONS_00028291-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ZN8363.630e-2034.68Zinc finger protein 836 OS=Homo sapiens GN=ZNF836 ... [more]
back to top