TCONS_00028227-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00028227-protein
Unique NameTCONS_00028227-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length603

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00028227-protein ID=TCONS_00028227-protein|Name=TCONS_00028227-protein|organism=Clytia hemisphaerica|type=polypeptide|length=603bp
MMSIVFPKNLCDKIKTNKMAALIEVIADNIIKLVNKDFEVKCKQLEAMKS
IIEGKDTLAILPTSYGKSLIFQMLPAVCKKLPSKPDNGIVLVISPLQALI
ADQVKSANKLKDPLGLNACSLSSSSKMDKILSGEFNIIVDSPELWMGDPK
TRKAMLSSPVFTKNLICIVVDEAHKVSWGVSNDGEKPFREMFGRIGEMRS
FVKENVPVLCLSATVDKNYTELIKSVCSLSKTVKIIHSCSDRPNIFLIVK
DIKRKKIDCFDWLFSLICEKNTECPKVLIYCRTQQLAGWLFKSFLLELGV
NMYKNKIMDQDNAIVALFHADTLPYIKEKVLLMLTSDECDSNIRIVICTS
ALGCGVNCRNILYVCHFGTSHNLVEYNQQIGRAGRGIDSQSYAILYKYPQ
AVKEVSSDIKNYVDSKNCLRSCLFAPFNSNNEPINPLTPLHSCCSNCSHF
CKCGSCPPNIFDSALQQQEQVTENEEVRSVTIDDKISIKAYLQSYHSQQC
SSQQLFIPSGIFSGLTSDTINKVVDNLPYINSPAYLVENLDLSANSAANI
FKMIQEHFEEDITVNEPPLRKRKLTFLEEERYEFSDDTSDDSSDTENDDE
EHI
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_015981XLOC_015981Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00028227TCONS_00028227Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR014001Helicase_ATP-bd
IPR001650Helicase_C
IPR011545DEAD/DEAH_box_helicase_dom
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0005524ATP binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005524 ATP binding
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR014001Helicase superfamily 1/2, ATP-binding domainSMARTSM00487ultradead3coord: 36..248
e-value: 6.3E-20
score: 82.2
IPR014001Helicase superfamily 1/2, ATP-binding domainPROSITEPS51192HELICASE_ATP_BIND_1coord: 48..233
score: 20.468
IPR001650Helicase, C-terminalSMARTSM00490helicmild6coord: 305..387
e-value: 9.3E-8
score: 41.8
IPR001650Helicase, C-terminalPFAMPF00271Helicase_Ccoord: 264..386
e-value: 1.7E-9
score: 37.9
IPR001650Helicase, C-terminalPROSITEPS51194HELICASE_CTERcoord: 266..435
score: 10.972
NoneNo IPR availableGENE3D3.40.50.300coord: 242..507
e-value: 9.9E-22
score: 76.8
NoneNo IPR availableGENE3D3.40.50.300coord: 8..239
e-value: 3.1E-23
score: 81.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 582..603
NoneNo IPR availableCDDcd00046DEXDccoord: 55..214
e-value: 1.2898E-14
score: 70.444
NoneNo IPR availableCDDcd00079HELICccoord: 244..396
e-value: 4.73875E-12
score: 62.6404
IPR011545DEAD/DEAH box helicase domainPFAMPF00270DEADcoord: 44..221
e-value: 2.0E-17
score: 63.4
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 87..401

Blast
[Close]
BLAST of TCONS_00028227-protein vs. Swiss-Prot (Human)
Match: WRN (Werner syndrome ATP-dependent helicase OS=Homo sapiens GN=WRN PE=1 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 1.046e-25
Identity = 122/442 (27.60%), Postives = 189/442 (42.76%), Query Frame = 0 
Query:   44 QLEAMKSIIE-GKDTLAILPTSYGKSLIFQMLPAVCKKLPSKPDNGIVLVISPLQALIADQVKSANKLKDPLGLNACSLSSSSK---MDKILSGEFNIIVDSPELWMGDPKTRKAMLSSPVFTKNLICIVVDEAHKVS-WGVSNDGEKPFREMFGRIGEMRSFVKENVPVLCLSATVDKNYTELIKSVCSLSKTVKIIHSCSDRPNIFLIVKDIKRKKIDCFDWLFSLICEKNT----ECPKVLIYC----RTQQLAGWLFKSFLLELGVNMYKNKIMDQDNAIVALFHADTLPYIKEKVLLMLTSDECDSNIRIVICTSALGCGVNCRNILYVCHFGTSHNLVEYNQQIGRAGR-GIDSQSYAI----------------------LYKYPQAVKEVSSDIKNYVDSKNCLRSCLFAPFNSNNEPINPLTPLHS--CCSNC 447
            Q + + S++E  +D +A++ T YGKSL FQ  P    K        I LVISPL +L+ DQV        P    AC L S+     +  I  G++ I+  +PE   G+      +L        +  I VDEAH +S WG        FR+ F ++G +++ +   VP++ L+AT   +  E I    +L +  +I  +  DRPN++L   +++RK  +    L   + + ++    E P + IYC     TQQ+ G L K   L L    Y               HA      ++ +      DE    I+ VI T A G G+N  +I  V H+G   ++  Y Q+IGRAGR G+ S  + +                      LYK     K     ++ Y+ S  C R  + + F         L  + +  CC NC
Sbjct:  553 QWKVIHSVLEERRDNVAVMATGYGKSLCFQYPPVYVGK--------IGLVISPLISLMEDQVLQLKMSNIP----ACFLGSAQSENVLTDIKLGKYRIVYVTPEYCSGN----MGLLQQLEADIGITLIAVDEAHCISEWG------HDFRDSFRKLGSLKTALP-MVPIVALTATASSSIREDIVRCLNL-RNPQITCTGFDRPNLYL---EVRRKTGNILQDLQPFLVKTSSHWEFEGPTI-IYCPSRKMTQQVTGELRK---LNLSCGTY---------------HAGMSFSTRKDIHHRFVRDE----IQCVIATIAFGMGINKADIRQVIHYGAPKDMESYYQEIGRAGRDGLQSSCHVLWAPADINLNRHLLTEIRNEKFRLYKLKMMAK-----MEKYLHSSRCRRQIILSHFEDKQVQKASLGIMGTEKCCDNC 939
The following BLAST results are available for this feature:
BLAST of TCONS_00028227-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
WRN1.046e-2527.60Werner syndrome ATP-dependent helicase OS=Homo sap... [more]
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