TCONS_00028173-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00028173-protein
Unique NameTCONS_00028173-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length617

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00028173-protein ID=TCONS_00028173-protein|Name=TCONS_00028173-protein|organism=Clytia hemisphaerica|type=polypeptide|length=617bp
SKTWIKISFLSCLVFVALAETGEADKVPEAPKEDDGVLVLTDDNFKGVIE
KEKFVLVEFYAPWCGHCKALAPAYAEAAKQLKKSENPVPLAKVDCTVEKD
VCNTHQVQGYPTLKWFKDGEASDYDGPRDHDGIVSYVLERSDPNYKPPPE
AVLTLTKDNFDEITQKEELMLVEFYAPWCGHCKKIGPELEKAAKVLQKRE
KPISIGKVDATVETDLATKFEVTGYPTMFIMRNGKKYEYKGPRNEPEISE
YLINQEGEATKLKATMKEVKNFIKDPNNNDPVILAVADNAEDPIYKLFVE
ANNDVRDDYSFGHTFAKEAKKYFGLKKSAILLIQPDHLRSKHEAKQHVYQ
DESGSPSEVQEFYKKNYIPLVGFFRTDNENRFKKKPMVLVFYDVNFSPTY
RSITQFWRSKVVEVAKEFPDVQFAVANEEDSEGRLKDLGLTESGEDVNVG
AYDAAGRRYALVDEEFSEDTLTEFVEEFLKGNLKPVIKSQRAAPKAKPGK
VQVVTGNTFDQIIMDESKEVFIEFYAPWCGHCKAIEGYINKLAAKYKGEK
DIIIAKMDGTLNEGPSQYAFEGFPTIYYSLPGKKNEPIKLDGKRDMDALV
KFIETNSKVLKNKKTEL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_015945XLOC_015945Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00028173TCONS_00028173Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005792Prot_disulphide_isomerase
IPR005788Disulphide_isomerase
IPR013766Thioredoxin_domain
IPR017937Thioredoxin_CS
IPR012336Thioredoxin-like_fold
Vocabulary: Molecular Function
TermDefinition
GO:0016853isomerase activity
Vocabulary: Cellular Component
TermDefinition
GO:0005783endoplasmic reticulum
Vocabulary: Biological Process
TermDefinition
GO:0045454cell redox homeostasis
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0045454 cell redox homeostasis
cellular_component GO:0005783 endoplasmic reticulum
molecular_function GO:0016853 isomerase activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR00421THIOREDOXINcoord: 106..117
score: 43.8
coord: 55..63
score: 65.93
coord: 63..72
score: 67.56
NoneNo IPR availableGENE3D3.40.30.10coord: 487..616
e-value: 5.2E-29
score: 100.3
coord: 145..268
e-value: 6.2E-33
score: 113.0
NoneNo IPR availableGENE3D3.40.30.10coord: 269..369
e-value: 3.5E-13
score: 49.1
NoneNo IPR availableGENE3D3.40.30.10coord: 379..481
e-value: 5.5E-23
score: 80.7
NoneNo IPR availablePFAMPF13848Thioredoxin_6coord: 289..476
e-value: 2.6E-17
score: 63.3
NoneNo IPR availableGENE3D3.40.30.10coord: 18..144
e-value: 5.0E-36
score: 123.5
NoneNo IPR availableSFLDSFLDG00345PDI-likecoord: 152..253
e-value: 7.5E-31
score: 101.0
coord: 38..139
e-value: 3.1E-35
score: 115.1
coord: 502..606
e-value: 8.9E-21
score: 68.6
NoneNo IPR availableCDDcd02961PDI_a_familycoord: 153..252
e-value: 1.34495E-34
score: 125.801
NoneNo IPR availableCDDcd02995PDI_a_PDI_a'_Ccoord: 501..603
e-value: 2.07776E-42
score: 147.318
NoneNo IPR availableCDDcd02961PDI_a_familycoord: 38..137
e-value: 5.63191E-32
score: 118.482
IPR005792Protein disulphide isomeraseTIGRFAMTIGR01130TIGR01130coord: 150..611
e-value: 5.3E-133
score: 443.0
IPR005788Disulphide isomeraseTIGRFAMTIGR01126TIGR01126coord: 40..140
e-value: 2.4E-37
score: 125.4
coord: 155..254
e-value: 3.6E-34
score: 115.2
IPR013766Thioredoxin domainPFAMPF00085Thioredoxincoord: 501..605
e-value: 1.2E-24
score: 86.1
coord: 152..252
e-value: 2.2E-28
score: 98.2
coord: 37..137
e-value: 5.7E-31
score: 106.4
IPR013766Thioredoxin domainPROSITEPS51352THIOREDOXIN_2coord: 144..258
score: 13.051
IPR013766Thioredoxin domainPROSITEPS51352THIOREDOXIN_2coord: 19..142
score: 15.533
IPR013766Thioredoxin domainPROSITEPS51352THIOREDOXIN_2coord: 483..608
score: 14.13
IPR017937Thioredoxin, conserved sitePROSITEPS00194THIOREDOXIN_1coord: 56..74
IPR017937Thioredoxin, conserved sitePROSITEPS00194THIOREDOXIN_1coord: 521..539
IPR017937Thioredoxin, conserved sitePROSITEPS00194THIOREDOXIN_1coord: 171..189
IPR012336Thioredoxin-like foldSUPERFAMILY52833Thioredoxin-likecoord: 145..255
IPR012336Thioredoxin-like foldSUPERFAMILY52833Thioredoxin-likecoord: 265..369
IPR012336Thioredoxin-like foldSUPERFAMILY52833Thioredoxin-likecoord: 31..140
IPR012336Thioredoxin-like foldSUPERFAMILY52833Thioredoxin-likecoord: 366..490
IPR012336Thioredoxin-like foldSUPERFAMILY52833Thioredoxin-likecoord: 463..606

Blast
[Close]
BLAST of TCONS_00028173-protein vs. Swiss-Prot (Human)
Match: PDIA4 (Protein disulfide-isomerase A4 OS=Homo sapiens GN=PDIA4 PE=1 SV=2)

HSP 1 Score: 593.578 bits (1529), Expect = 0.000e+0
Identity = 295/588 (50.17%), Postives = 399/588 (67.86%), Query Frame = 0 
Query:   35 DGVLVLTDDNFKGVIEKEKFVLVEFYAPWCGHCKALAPAYAEAAKQLKKSENPVPLAKVDCTVEKDVCNTHQVQGYPTLKWFKDGEASDYDGPRDHDGIVSYVLERSDPNYKPPPEAVLTLTKDNFDEITQKEELMLVEFYAPWCGHCKKIGPELEKAAKVLQKREKPISIGKVDATVETDLATKFEVTGYPTMFIMRNGKKYEYKGPRNEPEISEYLINQEGEATKLKATMKEVKNFIKDPNNNDPVILAVADNAEDPIYKLFVEANNDVRDDYSFGHTFAKEAKKYFGLKKSAILLIQPDHLRSKHEAKQHVYQDESGSP--SEVQEFYKKNYIPLVGFFRTDNE-NRFKKKPMVLVFYDVNFSPTYRSITQFWRSKVVEVAKEFPDVQFAVANEEDSEGRLKDLGLTESGEDVNVGAYDAAGRRYALVDEEFSEDTLTEFVEEFLKGNLKPVIKSQRAAPKAKPGKVQVVTGNTFDQIIMDESKEVFIEFYAPWCGHCKAIEGYINKLAAKYKGEKDIIIAKMDGTLNEGPS-QYAFEGFPTIYYSLPGKKNEPIKLD-GKRDMDALVKFIETNSKVLKNKKTEL 617
            +GVLVL D NF   +  +  VL+EFYAPWCGHCK  AP Y + A  LK  + P+P+AK+D T    + +   V GYPT+K  K G+A DY+G R  + IV+ V E S P++ PPPE  L LTK+NFDE+    +++LVEFYAPWCGHCKK+ PE EKAAK L KR  PI + KVDAT ETDLA +F+V+GYPT+ I R G+ Y+Y GPR +  I +Y+I Q G  +K   T+K+V+ F+KD   +D +I+ V     DP Y+ + +A N++R+DY F HTF+ E  K+  + +  ++++QP+  +SK+E + H+  D  GS   S +++F  K  +PLVG  +  N+  R+ ++P+V+V+Y V+FS  YR+ TQFWRSKV+EVAK+FP+  FA+A+EED  G +KDLGL+ESGEDVN    D +G+++A+  EEF  DTL EFV  F KG LKPVIKSQ   PK   G V+VV G TFD I+MD  K+V IEFYAPWCGHCK +E   N LA KYKG+K ++IAKMD T N+ PS +Y  EGFPTIY++  G K  P+K + G RD++ L KFIE ++  L   K EL
Sbjct:   62 NGVLVLNDANFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDATSASVLASRFDVSGYPTIKILKKGQAVDYEGSRTQEEIVAKVREVSQPDWTPPPEVTLVLTKENFDEVVNDADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATAETDLAKRFDVSGYPTLKIFRKGRPYDYNGPREKYGIVDYMIEQSGPPSKEILTLKQVQEFLKD--GDDVIIIGVFKGESDPAYQQYQDAANNLREDYKFHHTFSTEIAKFLKVSQGQLVVMQPEKFQSKYEPRSHM-MDVQGSTQDSAIKDFVLKYALPLVGHRKVSNDAKRYTRRPLVVVYYSVDFSFDYRAATQFWRSKVLEVAKDFPEYTFAIADEEDYAGEVKDLGLSESGEDVNAAILDESGKKFAMEPEEFDSDTLREFVTAFKKGKLKPVIKSQ-PVPKNNKGPVKVVVGKTFDSIVMDPKKDVLIEFYAPWCGHCKQLEPVYNSLAKKYKGQKGLVIAKMDATANDVPSDRYKVEGFPTIYFAPSGDKKNPVKFEGGDRDLEHLSKFIEEHATKLSRTKEEL 645
The following BLAST results are available for this feature:
BLAST of TCONS_00028173-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PDIA40.000e+050.17Protein disulfide-isomerase A4 OS=Homo sapiens GN=... [more]
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