TCONS_00028169-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00028169-protein
Unique NameTCONS_00028169-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length421

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00028169-protein ID=TCONS_00028169-protein|Name=TCONS_00028169-protein|organism=Clytia hemisphaerica|type=polypeptide|length=421bp
MREVISVHIGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFN
TFFSETGAGKHVPRAVFVDLEPSVVDEIRTGTYRQLFHPEQLISGKEDAA
NNYARGHYTVGKEQIDQVLDRVRKLADQCTGLQGFLIFHSFGGGTGSGFT
SLMMERLSVDYGKKSKLEFAVYPAPQISTAVVEPYNAVLTTHTTLEHSDC
AFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNV
DLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVSEITNACFEPAN
QLVKCDPRHGKYMACCLLFRGDVVPKDVNAAIATIKTKRTIQFVDWCPTG
FKVGINYQPPTAVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYA
KRAFVHWYVGEGKKHNRFKSF
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_015944XLOC_015944Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00028169TCONS_00028169Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002452Alpha_tubulin
IPR000217Tubulin
IPR003008Tubulin_FtsZ_GTPase
IPR018316Tubulin/FtsZ_2-layer-sand-dom
IPR017975Tubulin_CS
IPR008280Tub_FtsZ_C
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0005200structural constituent of cytoskeleton
GO:0003924GTPase activity
Vocabulary: Cellular Component
TermDefinition
GO:0005874microtubule
Vocabulary: Biological Process
TermDefinition
GO:0007017microtubule-based process
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007017 microtubule-based process
cellular_component GO:0005874 microtubule
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
molecular_function GO:0005200 structural constituent of cytoskeleton
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002452Alpha tubulinPRINTSPR01162ALPHATUBULINcoord: 274..289
score: 81.09
coord: 321..342
score: 90.07
coord: 45..58
score: 84.51
coord: 360..379
score: 85.59
coord: 120..128
score: 78.06
coord: 347..360
score: 93.16
coord: 214..226
score: 88.95
coord: 18..33
score: 95.27
coord: 148..160
score: 75.37
coord: 385..401
score: 83.89
coord: 88..101
score: 94.12
coord: 161..172
score: 83.19
IPR000217TubulinPRINTSPR01161TUBULINcoord: 108..132
score: 59.1
coord: 10..30
score: 65.85
coord: 380..408
score: 57.47
coord: 53..72
score: 68.27
coord: 134..152
score: 69.83
coord: 178..191
score: 69.33
coord: 153..174
score: 42.21
coord: 192..212
score: 59.18
coord: 95..106
score: 65.77
IPR003008Tubulin/FtsZ, GTPase domainSMARTSM00864Tubulin_4coord: 49..246
e-value: 1.1E-82
score: 290.7
IPR003008Tubulin/FtsZ, GTPase domainPFAMPF00091Tubulincoord: 3..213
e-value: 2.9E-68
score: 229.9
IPR003008Tubulin/FtsZ, GTPase domainGENE3D3.40.50.1440coord: 1..265
e-value: 6.3E-130
score: 431.8
IPR003008Tubulin/FtsZ, GTPase domainSUPERFAMILY52490Tubulin nucleotide-binding domain-likecoord: 1..244
IPR018316Tubulin/FtsZ, 2-layer sandwich domainSMARTSM00865Tubulin_C_4coord: 248..393
e-value: 1.8E-57
score: 206.9
IPR018316Tubulin/FtsZ, 2-layer sandwich domainPFAMPF03953Tubulin_Ccoord: 263..391
e-value: 8.3E-50
score: 168.1
IPR018316Tubulin/FtsZ, 2-layer sandwich domainGENE3D3.30.1330.20coord: 266..383
e-value: 6.2E-59
score: 196.8
NoneNo IPR availableGENE3D1.10.287.600coord: 384..420
e-value: 4.3E-16
score: 58.1
NoneNo IPR availableCDDcd02186alpha_tubulincoord: 2..412
e-value: 0.0
score: 859.148
IPR017975Tubulin, conserved sitePROSITEPS00227TUBULINcoord: 142..148
IPR008280Tubulin/FtsZ, C-terminalSUPERFAMILY55307Tubulin C-terminal domain-likecoord: 246..418

Blast
[Close]
BLAST of TCONS_00028169-protein vs. Swiss-Prot (Human)
Match: TBA1A (Tubulin alpha-1A chain OS=Homo sapiens GN=TUBA1A PE=1 SV=1)

HSP 1 Score: 815.068 bits (2104), Expect = 0.000e+0
Identity = 389/418 (93.06%), Postives = 410/418 (98.09%), Query Frame = 0 
Query:    1 MREVISVHIGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPSVVDEIRTGTYRQLFHPEQLISGKEDAANNYARGHYTVGKEQIDQVLDRVRKLADQCTGLQGFLIFHSFGGGTGSGFTSLMMERLSVDYGKKSKLEFAVYPAPQISTAVVEPYNAVLTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVSEITNACFEPANQLVKCDPRHGKYMACCLLFRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTAVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGKKHNRF 418
            MRE IS+H+GQAGVQ+GNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEP+V+DE+RTGTYRQLFHPEQLI+GKEDAANNYARGHYT+GKE ID VLDR+RKLADQCTGLQGFL+FHSFGGGTGSGFTSL+MERLSVDYGKKSKLEF++YPAPQ+STAVVEPYN++LTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQL+V+EITNACFEPANQ+VKCDPRHGKYMACCLL+RGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPT VPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEG +   F
Sbjct:    1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEF 418
The following BLAST results are available for this feature:
BLAST of TCONS_00028169-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TBA1A0.000e+093.06Tubulin alpha-1A chain OS=Homo sapiens GN=TUBA1A P... [more]
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