TCONS_00027878-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00027878-protein
Unique NameTCONS_00027878-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length947

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00027878-protein ID=TCONS_00027878-protein|Name=TCONS_00027878-protein|organism=Clytia hemisphaerica|type=polypeptide|length=947bp
MIIESVDSLKTWLVKELEPICDADPAALAKYVIALVKKEKSEADLKALCE
DQLDVFLGEETRQFVGNLFKALGDNSYLPPAPLLTQPTVEEPIKEVEQKG
TKRKSFEETPKDDFEKLAKTEKNTDVGKVVSDKENIDNVDNSNNDGSKNE
NNISEGNATENNRLQVERSDDVRMRSVSKDRSMKSMSPRARHRTRRSSRS
PNRSSRHSRHMPSGSGSSRSTRSDKSRDSRSNRDNGRRTKSSRREATRER
CRDYEEKGYCMLGETCRFDHGRDPVEVDDRNLPHMLSLATANTFPPSSQP
NNAATMANPSVPVFQNVIGQRPMVPPIGTANLNTSLTTVQVQNTRPSPVE
INTQVPIFRPRNPMALFRNISPTGVPPAIPGQPTPPQAAIPHQQPPISET
YNPEQPSILETDEVLKETKISVDKVKEDADRSQDELVQIAMGNVPLTPIL
GQQPTFPINGAQTMNFPDLIQPQHIMRPAEPMKQVVRVTGNKPYHGGNNT
CLEIRKIPGELNNMVKLSEHFQKFGTITKLQSPFDADPQGALIEFATNRE
AYAAYSSPEAILGNRFIKMFWHKPAKDANNPHNGGKDNVRGIGATSTTSE
IKTETSAPLPPPEPKKVAKAGELYFRNPKSDPKLIQMEKKKELEQLKNEL
RKKKQKSYEDLVEKQKQILSKLQEKGLSKEEKTKLMKTFSTCDTTIKKLK
HEIQEETVQARAAQNLHQAKPYKNTKKEILDKEIDIIHGNLQGEELVEAK
KDLEMLKEEMGYDPSARGGRGGYRGRGRGGAWWKTRGRGRGSARAMSTVD
NRPKKILVAGYTVDEKDSVLAHFNTISHVDQIEEISTEKMVITFPNRKGA
EIAAIQGIDFNGKQLQLSWFTGQINKPTNTSTTGATDRPKIQRRMTRSLS
QSLMEKDLEDDLLEDVDKEEEDMLLAGVDDEDDEDDTESITDRSWKR
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_015757XLOC_015757Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00027878TCONS_00027878Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000571Znf_CCCH
IPR002483PWI_dom
IPR000504RRM_dom
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
GO:0003676nucleic acid binding
Vocabulary: Biological Process
TermDefinition
GO:0006397mRNA processing
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006397 mRNA processing
molecular_function GO:0046872 metal ion binding
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 415..435
NoneNo IPR availableCOILSCoilCoilcoord: 696..716
NoneNo IPR availableCOILSCoilCoilcoord: 633..675
NoneNo IPR availableGENE3D1.20.1390.10coord: 1..116
e-value: 2.3E-18
score: 65.5
NoneNo IPR availableGENE3D3.30.70.330coord: 482..585
e-value: 3.0E-4
score: 20.4
NoneNo IPR availableGENE3D4.10.1000.10coord: 201..277
e-value: 2.7E-6
score: 26.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 577..616
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 82..251
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 874..947
NoneNo IPR availableCDDcd12257RRM1_RBM26_likecoord: 499..572
e-value: 1.1339E-30
score: 115.722
IPR000571Zinc finger, CCCH-typeSMARTSM00356c3hfinal6coord: 246..272
e-value: 2.0E-4
score: 30.7
IPR000571Zinc finger, CCCH-typePFAMPF00642zf-CCCHcoord: 248..272
e-value: 2.8E-5
score: 23.8
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 245..273
score: 13.432
IPR000571Zinc finger, CCCH-typeSUPERFAMILY90229CCCH zinc fingercoord: 248..274
IPR002483PWI domainPFAMPF01480PWIcoord: 7..72
e-value: 1.6E-8
score: 34.6
IPR000504RNA recognition motif domainSUPERFAMILY54928RNA-binding domain, RBDcoord: 498..574

Blast
[Close]
BLAST of TCONS_00027878-protein vs. Swiss-Prot (Human)
Match: RBM27 (RNA-binding protein 27 OS=Homo sapiens GN=RBM27 PE=1 SV=2)

HSP 1 Score: 165.236 bits (417), Expect = 1.481e-41
Identity = 120/323 (37.15%), Postives = 169/323 (52.32%), Query Frame = 0 
Query:    1 MIIESVDSLKTWLVKELEPICDADPAALAKYVIALVKKEKSEADLKALCEDQLDVFLGEETRQFVGNLFKALGDNSYLPPAPLLTQPTVEEPIKEVEQKGTKRKSFEETPKDDFEKLAKTEKNTDVGKVVSDKENIDNVDNSNNDGSKNENNISEGNATENNRLQVERSDDVRMRSVSKDRSMKSMSPRARHRTRRSSRSPNRSSRH--------------SRHMP-------------SGSGSSRST--------RSDKSRDSRSNRDNGRRTKSS--RREATRERCRDYEEKGYCMLGETCRFDHGRDPVEVDDRNLPHML 286
            M+IE VD+LK+WL K LEPICDADP+ALA YV+ALVKK+K E +LKA C DQLDVFL +ET  FV  LF++L   +YLP    L +P   EP   V++K   ++   + P ++ E+  + +K     K  S+       +    DG   + +       E N L  E+ D  R RS S+ +S      R+R R R   R PNR+  H              S ++P             SG+ S  ST         S+ + +S SN  N   + +S  R    + RCRDY+E+G+C+LG+ C+FDHG DP+ VD+  LP M+
Sbjct:    1 MLIEDVDALKSWLAKLLEPICDADPSALANYVVALVKKDKPEKELKAFCADQLDVFLQKETSGFVDKLFESLYTKNYLP----LLEPVKPEPKPLVQEKEEIKEEVFQEPAEE-ERDGRKKKYPSPQKTRSESSERRTREKKREDGKWRDYD----RYYERNELYREKYDWRRGRSKSRSKSRGLSRSRSRSRGRSKDRDPNRNVEHRERSKFKSERNDLESSYVPVSAPPPNSSEQYSSGAQSIPSTVTVIAPAHHSENTTESWSNYYNNHSSSNSFGRNLPPKRRCRDYDERGFCVLGDLCQFDHGNDPLVVDEVALPSMI 314

HSP 2 Score: 102.064 bits (253), Expect = 6.503e-22
Identity = 44/75 (58.67%), Postives = 56/75 (74.67%), Query Frame = 0 
Query:  499 NTCLEIRKIPGELNNMVKLSEHFQKFGTITKLQSPFDADPQGALIEFATNREAYAAYSSPEAILGNRFIKMFWHK 573
            NT LE++KIP ELNN+ KL+EHF KFGTI  +Q  F  DP+ ALI++ TN EA  A SS EA+L NRFI++ WH+
Sbjct:  599 NTKLEVKKIPQELNNITKLNEHFSKFGTIVNIQVAFKGDPEAALIQYLTNEEARKAISSTEAVLNNRFIRVLWHR 673
The following BLAST results are available for this feature:
BLAST of TCONS_00027878-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RBM271.481e-4137.15RNA-binding protein 27 OS=Homo sapiens GN=RBM27 PE... [more]
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