TCONS_00027834-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00027834-protein
Unique NameTCONS_00027834-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length311

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00027834-protein ID=TCONS_00027834-protein|Name=TCONS_00027834-protein|organism=Clytia hemisphaerica|type=polypeptide|length=311bp
LETKYIKIMDSWLHCNTCFHLPNGESVQFHLTSCGHIFCNTCLNKNLDKE
CKTCGQTYAGAIPLSSKLKPDVQLYFMDMKDVCKNITKQVQQAQLVSEFQ
KGHSQRLHSHQKQKLRKLTEMMHQARELERQYREVLWENDKLKNFVLSMG
YQVQDVLGRASKSYPMTPKTPVTPGVAKAPVTPGFTPGLKRTHSNQSMVS
VNSQRPSPLNNRVTSGKPLARPGSSPMQQSPSHRHMQPSPVGSMMSRSRT
PGNNATNGTPKSVVASGRITMRTPPINGKLGPISKSPHLSNQQLRSPASS
QMIISNRLASL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_015728XLOC_015728Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00027834TCONS_00027834Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR001841Znf_RING
IPR017907Znf_RING_CS
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 111..138
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 168..301
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 6..58
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 2..138
e-value: 1.3E-7
score: 31.0
IPR001841Zinc finger, RING-typePFAMPF14634zf-RING_5coord: 14..56
e-value: 1.2E-9
score: 37.8
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 15..54
score: 9.701
IPR001841Zinc finger, RING-typeCDDcd00162RINGcoord: 29..54
e-value: 7.04354E-4
score: 35.4992
IPR017907Zinc finger, RING-type, conserved sitePROSITEPS00518ZF_RING_1coord: 34..43

Blast
[Close]
BLAST of TCONS_00027834-protein vs. Swiss-Prot (Human)
Match: RN212 (Probable E3 SUMO-protein ligase RNF212 OS=Homo sapiens GN=RNF212 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 3.169e-18
Identity = 39/117 (33.33%), Postives = 66/117 (56.41%), Query Frame = 0 
Query:    9 MDSWLHCNTCFHLPNGESVQFHLTSCGHIFCNTCLNKNLDKECKTCGQTYAGAIPLSSKLKPDVQLYFMDMKDVCKNITKQVQQAQLVSEFQKGHSQRLHSHQKQKLRKLTEMMHQA 125
            M +W+ CN CF  P+  S  F LT+CGH++C+ CL K    EC  C +     + LS     D+Q +FM +  +CK  +++  Q   + EFQ+ H +RL +  ++K+ +L E + ++
Sbjct:    1 MANWVFCNRCFQPPHRTSC-FSLTNCGHVYCDACLGKGKKNECLIC-KAPCRTVLLSKHTDADIQAFFMSIDSLCKKYSRETSQ---ILEFQEKHRKRLLAFYREKISRLEESLRKS 112
The following BLAST results are available for this feature:
BLAST of TCONS_00027834-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RN2123.169e-1833.33Probable E3 SUMO-protein ligase RNF212 OS=Homo sap... [more]
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