TCONS_00027713-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00027713-protein
Unique NameTCONS_00027713-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1660

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00027713-protein ID=TCONS_00027713-protein|Name=TCONS_00027713-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1660bp
IPFDDEHDEAAKSTAYSIQANCIDPKRTDGLCFDADQYVRNEHNLSAVIY
NFNLRPDVLRSLNVSLDNQMICANNTPVFGIIAPSQILRSKVLMQYKVNV
RPNILVVKATIKLKLHSTTLTNGMSFTVNLFKDNIETNTDCNTYGGDLLD
FGASLDAHLQPNNQGYTELDIAHLVQRTVSRKDWGSKNFLTLVISSNAEG
EQTSGTLYYQPDDCIFDLQFRDFSPSKYLYFPQNTKFLSYITDSIIVGVQ
SLSFWFWLSGEDAGQLIVWKFASTARNQYPTRTAKSTPLVAIANDQGPGW
KNVRINIEPSNSNIKLEIMALNSFGEDSTIAIDNVQLSKTPFPDDQITAQ
YVPKTEYEGKESYKLELQLLNISLPILFYPFTSMSWIDDYGPFSLHLSIT
LLLYSYTRDWFDYPGNSMWAQGAHGHYLHAYKVRVEDTGNIPAMMEDQFT
ILFHIYLYNHANRRTIMLFGDGFDSRFEIFQNNRNQLAINMTRSDGGNWQ
IITCNTKLAHETWHYIGFRYDKPKFSFIYNEKVVKEVNLNSIVIPNQLHF
FRDPVYYGLRDYTSYWTGRIGCFQIYDFAMSIFHIELIRLCPTMHDSNLA
ESKECSFGGVSLSTSKQCVCTRKVRFSDALCENGLTNTIYKNATAYLSFD
YEQLPEARNFTFKNYTAEFQCNSILNFGYCCNTDECVIGNFTESCLDNGC
PGEDVIISYWFYYTGQSPLGVESLILSVGQLKMFIHHQAFPAQTTGSIQW
VDQNCRYEFDIPVLSWLHVSVHIKDSTMLLYFDGQLHNHQEQCTIGTPTD
VNNEGITELKIGYVTIDEFSVFPWMNELPELYNHVITGNITTEEVLYERH
FKIKMSIESPDIRPQDVSMVNEGLKNEEYFDAQYMIHQALSSVFTEDYSS
GLHTRLLHTELTAVTSTDPVIIEAACSFEYVSKNIWDGVGIPHEYNERRY
TFQVLDSSEIGEFLRTTDMEYDLITLSSREVQINMTSSRPLHNAYEVRVV
VNEINTTLDALMNETRYFHYGLPTMNIPGLFPFRNVSVTVFIVSHFGYSK
PITKTVETLGEINVNAPSFEQTIDLNSTAVQVSWQNYAFENWRSRHLNYI
LYWRQLDSIPAVISTDSIWVSSNTSLTDFESRNMPGGLVDYRTTDLLTTS
YNVTDLKMNTGYHFVLQVYNEFGLTLNCSNIFGVTQENIPYGPPINVSGN
AINSTSITLVMKQPEEHLRNGVILGYQVTYWTSEDAHVSINITRSLDANE
TNVILWGLRKFFDHNITVRAFTKIGLGPASNVTVIKTLEDVPSAAPLNFT
ITTLSHDSFSLSWKQIPYLQQHSIMRNFTVTCGGMLANGTSHLIHDVSPA
EESRQEYEFSISQLFPNTAYDCMLDGCNTLGCGPKTNTSNITFEYYPSGT
VQSISQTSLEMKESLHINFTDLLVMDKKGNITKFNISLNKIENLWDTVND
TTKYFIIDGRTFELSMHGLDNFTEYEVSVTAYTLIGPGPTKNSVFRTATN
VPSGSPYITYLNNISSSAINVKFDALDKSWSEGPITGYVIYYQLTEDLLH
CDGADCLSMNGSCVNETTFDLNIDGLELWSNYSVWIAAQTEAGIGVQSQI
WTVMTGAFVNGNWTEWTSWGTCDVSCGLGYIRRERWCTNPEPLHGGEDCE
GVDEETIPCN
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_015643XLOC_015643Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00027713TCONS_00027713Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000884TSP1_rpt
IPR003961FN3_dom
IPR000998MAM_dom
IPR013783Ig-like_fold
IPR013320ConA-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000884Thrombospondin type-1 (TSP1) repeatSMARTSM00209TSP1_2coord: 1613..1660
e-value: 1.6E-6
score: 37.6
IPR000884Thrombospondin type-1 (TSP1) repeatPFAMPF00090TSP_1coord: 1615..1660
e-value: 4.4E-8
score: 33.1
IPR000884Thrombospondin type-1 (TSP1) repeatGENE3D2.20.100.10coord: 1609..1660
e-value: 1.7E-13
score: 50.1
IPR000884Thrombospondin type-1 (TSP1) repeatPROSITEPS50092TSP1coord: 1610..1660
score: 11.856
IPR000884Thrombospondin type-1 (TSP1) repeatSUPERFAMILY82895TSP-1 type 1 repeatcoord: 1609..1660
IPR003961Fibronectin type IIISMARTSM00060FN3_2coord: 1191..1277
e-value: 0.0015
score: 27.8
coord: 1503..1595
e-value: 2.7
score: 16.3
coord: 1293..1383
e-value: 3.4
score: 15.5
coord: 1398..1488
e-value: 20.0
score: 8.9
coord: 1064..1175
e-value: 0.0022
score: 27.3
IPR003961Fibronectin type IIIPFAMPF00041fn3coord: 1295..1385
e-value: 5.1E-6
score: 26.7
coord: 1193..1280
e-value: 2.4E-9
score: 37.3
IPR003961Fibronectin type IIIPROSITEPS50853FN3coord: 1400..1501
score: 9.342
IPR003961Fibronectin type IIIPROSITEPS50853FN3coord: 1193..1290
score: 18.643
IPR003961Fibronectin type IIIPROSITEPS50853FN3coord: 1295..1398
score: 12.458
IPR003961Fibronectin type IIIPROSITEPS50853FN3coord: 1066..1188
score: 9.499
IPR003961Fibronectin type IIIPROSITEPS50853FN3coord: 1502..1608
score: 11.874
IPR003961Fibronectin type IIICDDcd00063FN3coord: 1426..1497
e-value: 0.00521036
score: 35.9351
IPR003961Fibronectin type IIICDDcd00063FN3coord: 1192..1287
e-value: 1.35071E-9
score: 56.3507
IPR003961Fibronectin type IIICDDcd00063FN3coord: 1074..1173
e-value: 1.03341E-4
score: 41.3279
IPR003961Fibronectin type IIICDDcd00063FN3coord: 1513..1605
e-value: 2.28807E-6
score: 46.7207
IPR003961Fibronectin type IIISUPERFAMILY49265Fibronectin type IIIcoord: 1426..1605
IPR003961Fibronectin type IIISUPERFAMILY49265Fibronectin type IIIcoord: 1192..1392
IPR003961Fibronectin type IIISUPERFAMILY49265Fibronectin type IIIcoord: 1136..1197
coord: 1066..1108
NoneNo IPR availableGENE3D2.60.120.200coord: 406..589
e-value: 1.7E-11
score: 44.0
NoneNo IPR availablePFAMPF13385Laminin_G_3coord: 446..581
e-value: 2.7E-8
score: 34.0
NoneNo IPR availableGENE3D2.60.120.200coord: 172..341
e-value: 2.3E-10
score: 40.3
NoneNo IPR availableGENE3D2.60.120.200coord: 635..855
e-value: 0.029
score: 13.8
IPR000998MAM domainPFAMPF00629MAMcoord: 252..340
e-value: 3.8E-8
score: 33.3
IPR000998MAM domainPROSITEPS50060MAM_2coord: 252..344
score: 9.024
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 1062..1184
e-value: 7.8E-8
score: 31.9
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 1288..1395
e-value: 7.5E-11
score: 41.7
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 1499..1608
e-value: 5.1E-10
score: 39.0
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 1185..1287
e-value: 3.9E-17
score: 61.8
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 1396..1498
e-value: 5.2E-8
score: 32.4
IPR013320Concanavalin A-like lectin/glucanase domainSUPERFAMILY49899Concanavalin A-like lectins/glucanasescoord: 446..596
IPR013320Concanavalin A-like lectin/glucanase domainSUPERFAMILY49899Concanavalin A-like lectins/glucanasescoord: 248..340

Blast
BLAST of TCONS_00027713-protein vs. Swiss-Prot (Human)
Match: PTPRD (Receptor-type tyrosine-protein phosphatase delta OS=Homo sapiens GN=PTPRD PE=1 SV=2)

HSP 1 Score: 135.191 bits (339), Expect = 1.754e-31
Identity = 138/497 (27.77%), Postives = 213/497 (42.86%), Query Frame = 0
Query: 1141 YRTTD-LLTTSYNVTDLKMNTGYHFVLQVYNEFGLTLNCSNIFGVTQENIPYGPPINVSGNAINSTSITLVMKQPEEHLRNGVILGYQVTYWTSEDAHVSINITRSLDANETNVILWGLRKFFDHNITVRAFTKIGLGPASNVTVIKTLEDVPSAAPLNFTITTLSHDSFSLSWKQIPYLQQHSIMRNFTVTCGGMLANGTSHLIHDVSPAEESRQEYE----FSISQLFPNTAYDCMLDGCNTLGCGPKT-NTSNITFEYYPSGTVQSISQTSLEMKESLHINFTDLLVMDKKGNITKFNISL-------NKIENLWDTVNDTTKYFIIDGRTFELSMHGLDNFTEYEVSVTAYTLIGPGPTKNSVF-RTATNVPSGSPYITYLNNISSSAINVKFDALDKSWSEGPITGYVIYY-----------QLTEDLLHCDGADCLSMNGSCVNETTFDLNIDGLELWSNYSVWIAAQTEAGIGVQSQIWTVMTGAFVNGN 1612
            Y+  D + TT Y+V  L   + Y F +   N  G       +   T E  P   P +V    ++ST+I +  K+PEE   NG I GY+V Y      HV+ N  +   A+     +  L     +++ V AFT IG GP S+   + T   VP   PLNF     S  S  LSW         +  R+ T+    ++     H        EE R   E    + +  L PN+ Y   L   +  G G  T   S  T +  PS   Q IS TS     S+ +++    V  + G IT+++I         +K   +    +DTTKY           +  L+ +TEY ++VTA+T +GPGP   SV  RT  +VPSG P    +  ++S+++ V + +   +   G I GY ++Y            + +D++  D            + T  D+ I GL+  ++YS+ + A T  G G +S+   V T   V G 
Sbjct:  367 YKEIDGVATTRYSVAGLSPYSDYEFRVVAVNNIGRGPPSEPVLTQTSEQAPSSAPRDVQARMLSSTTILVQWKEPEEP--NGQIQGYRVYYTMDPTQHVN-NWMKHNVADSQITTIGNLVPQKTYSVKVLAFTSIGDGPLSSDIQVITQTGVP-GQPLNFKAEPESETSILLSW---------TPPRSDTIANYELVYKDGEH-------GEEQRITIEPGTSYRLQGLKPNSLYYFRLAARSPQGLGASTAEISARTMQSKPSAPPQDISCTS-PSSTSILVSWQPPPVEKQNGIITEYSIKYTAVDGEDDKPHEILGIPSDTTKYL----------LEQLEKWTEYRITVTAHTDVGPGPESLSVLIRTNEDVPSGPPRKVEVEAVNSTSVKVSWRSPVPNKQHGQIRGYQVHYVRMENGEPKGQPMLKDVMLADA------QWEFDDTTEHDMIISGLQPETSYSLTVTAYTTKGDGARSKPKLVSTTGAVPGK 826          

HSP 2 Score: 106.686 bits (265), Expect = 8.301e-23
Identity = 120/479 (25.05%), Postives = 196/479 (40.92%), Query Frame = 0
Query: 1140 DYRTTDLLTTSYNVTDLKMNTGYHFVLQVYNEFGLTLNCSNIFGVTQENIPYGPPINVSGNAINSTSITLVMKQPEEHLRNGVILGYQVTYWTSEDAHVSINITRSLDANETNVILWGLRKFFDHNITVRAFTKIGLGPASNVTVIKTLEDVPSAAPLNFTITTLSHDSFSLSWKQIPYLQQHSIMRNFTVTCGGMLANGTSH---LIHDVSPAE-----ESRQEYEFSISQLFPNTAYDCMLDGCNTLGCGPKTNTSNITFEYYPSGTVQSISQTSLEMKESLHINFTDLLVMDKKGNITKFNISLNKIENLWDTVNDTTKYFIIDGR-------TFELSMHGLDNFT--------EYEVSVTAYTLIGPGPTKNSVFRTATNVPSGSPYITYLNNISSSAINVKFDALDKSWSEGPITGYVIYYQLTEDLLHCDGADCLSMNGSCVNETTFDLNIDGLELWSNYSVWIAAQTEAGIG 1595
            + R T    TSY +  LK N+ Y+F L   +  GL  + + I   T ++ P  PP ++S  + +STSI +  + P    +NG+I  Y + Y   +      +    + ++ T  +L  L K+ ++ ITV A T +G GP S   +I+T EDVPS  P    +  ++  S  +SW+     +QH  +R + V    M  NG      ++ DV  A+     +   E++  IS L P T+Y   +    T G G ++    ++     +G V          K  L IN T +            N +L +     DT      Y +  GR       T E S    D+FT         Y   ++A   +G G            VP+G P   +    +S+++ + +     +   G IT Y + Y+   D+        L M    V   T  + + GL+  + Y V + A T  G G
Sbjct:  559 EQRITIEPGTSYRLQGLKPNSLYYFRLAARSPQGLGASTAEISARTMQSKPSAPPQDISCTSPSSTSILVSWQPPPVEKQNGIITEYSIKYTAVDGEDDKPHEILGIPSDTTKYLLEQLEKWTEYRITVTAHTDVGPGPESLSVLIRTNEDVPSGPPRKVEVEAVNSTSVKVSWRSPVPNKQHGQIRGYQVHYVRM-ENGEPKGQPMLKDVMLADAQWEFDDTTEHDMIISGLQPETSYSLTVTAYTTKGDGARSKPKLVST----TGAVPG--------KPRLVINHTQM------------NTALIQWHPPVDTFGPLQGYRLKFGRKDMEPLTTLEFS-EKEDHFTATDIHKGASYVFRLSARNKVGFGEEMVKEISIPEEVPTGFPQNLHSEGTTSTSVQLSWQPPVLAERNGIITKYTLLYR---DI----NIPLLPMEQLIVPADT-TMTLTGLKPDTTYDVKVRAHTSKGPG 1003          

HSP 3 Score: 90.1225 bits (222), Expect = 9.540e-18
Identity = 94/369 (25.47%), Postives = 159/369 (43.09%), Query Frame = 0
Query: 1148 TTSYNVTDLKMNTGYHFVLQVYNEFGLTLNCSNIFGVTQENIPYGPPINVSGNAINSTSITLVMKQPEEHLRNGVILGYQVTYWTSEDAHVS-------INITRSL----DANETNVILWGLRKFFDHNITVRAFTKIGLGPASNVTVIKTLEDVPSAAPLNFTITTLSHDSFSLSWKQIPYLQQHSIMRNFTVTCGGMLANGTSHLIHDVSPAEESRQEYEFSISQLFPNTAYDCMLDGCNTLGCGPKTNTSNITFEYYPSGTVQSISQTSLEMKESLHINFTDLLVMDKKGNITKF-------NISLNKIENLWDTVNDTTKYFIIDGRTFELSMHGLDNFTEYEVSVTAYTLIGPGPTKNSV-FRT 1497
            TT Y +  L+  T Y   +  + + G      ++   T E++P GPP  V   A+NSTS+ +  + P  + ++G I GYQV Y   E+           + +  +     D  E ++I+ GL+    +++TV A+T  G G  S   ++ T   VP    L      ++H   + +      +Q H  +  F    G  L  G   +   ++  E S +E  F+ + +    +Y   L   N +G G +        E  P+G  Q++  +      S+ +++   ++ ++ G ITK+       NI L  +E L     DTT           +++ GL   T Y+V V A+T  GPGP   SV FRT
Sbjct:  669 TTKYLLEQLEKWTEYRITVTAHTDVGPGPESLSVLIRTNEDVPSGPPRKVEVEAVNSTSVKVSWRSPVPNKQHGQIRGYQVHYVRMENGEPKGQPMLKDVMLADAQWEFDDTTEHDMIISGLQPETSYSLTVTAYTTKGDGARSKPKLVSTTGAVPGKPRL-----VINHTQMNTA-----LIQWHPPVDTFGPLQGYRLKFGRKDM-EPLTTLEFSEKEDHFTATDIHKGASYVFRLSARNKVGFGEEMVKEISIPEEVPTGFPQNL-HSEGTTSTSVQLSWQPPVLAERNGIITKYTLLYRDINIPLLPMEQLI-VPADTT-----------MTLTGLKPDTTYDVKVRAHTSKGPGPYSPSVQFRT 1013          
The following BLAST results are available for this feature:
BLAST of TCONS_00027713-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PTPRD1.754e-3127.77Receptor-type tyrosine-protein phosphatase delta O... [more]
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