TCONS_00027639-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00027639-protein
Unique NameTCONS_00027639-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length246

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00027639-protein ID=TCONS_00027639-protein|Name=TCONS_00027639-protein|organism=Clytia hemisphaerica|type=polypeptide|length=246bp
MAFSSSITTKELARRLGLLKRRSSSISSNKEGQPSKKKSQIFSYVIVLDF
EAACWKEKLNGHHNEIIEFPAVLLDLSSGEIVDRFQHYVKPSEHKKLSTF
CTELTAITQEQVDGGISIRQCLKYFEDWVRKWKEEKQFTFDQNLNFKNRC
ALATWTDWDLNVCLKYECKRKGIQYPNYMKSWIDLKKTYKEFYMRPPKGL
RYAMEEVHLTFRGREHSGIDDATNTAYLTWQMIKDGCQLVLTLFDK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_015592XLOC_015592Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00027639TCONS_00027639Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013520Exonuclease_RNaseT/DNA_pol3
IPR012337RNaseH-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013520Exonuclease, RNase T/DNA polymerase IIISMARTSM00479exoiiienduscoord: 44..238
e-value: 8.9E-17
score: 71.7
IPR013520Exonuclease, RNase T/DNA polymerase IIIPFAMPF00929RNase_Tcoord: 46..228
e-value: 2.6E-28
score: 99.6
IPR012337Ribonuclease H-like domainGENE3D3.30.420.10coord: 22..240
e-value: 2.8E-42
score: 144.0
IPR012337Ribonuclease H-like domainSUPERFAMILY53098Ribonuclease H-likecoord: 40..238
NoneNo IPR availableCDDcd06133ERI-1_3'hExo_likecoord: 45..233
e-value: 6.66141E-69
score: 211.31

Blast
[Close]
BLAST of TCONS_00027639-protein vs. Swiss-Prot (Human)
Match: ERI2 (ERI1 exoribonuclease 2 OS=Homo sapiens GN=ERI2 PE=2 SV=2)

HSP 1 Score: 256.144 bits (653), Expect = 4.199e-81
Identity = 119/241 (49.38%), Postives = 163/241 (67.63%), Query Frame = 0 
Query:    7 ITTKELARRLGLLKRRSSSISSNKEGQPSKKKSQIFSYVIVLDFEAACWKEKLNGHHNEIIEFPAVLLDLSSGEIVDRFQHYVKPSEHKKLSTFCTELTAITQEQVDGGISIRQCLKYFEDWVRKWKEEKQFTFDQNLNFKNR-----CALATWTDWDLNVCLKYECKRKGIQYPNYMKSWIDLKKTYKEFYMRPPKGLRYAMEEVHLTFRGREHSGIDDATNTAYLTWQMIKDGCQLVLT 242
            + TK LAR+LGL++R+S + ++   G+   K  Q+F Y+IV+DFE+ CW +  + H  EIIEFPAVLL+ S+G+I   FQ YV+P EH  LS FC ELT I Q QVD G+ ++ CL  F  W+ K +++K   F   ++  +      CA  TW+DWDL VCL+YECKRK +  P ++ SWIDL+ TYK FY R PKGL  A++EV + F GREHSG+DD+ NTA L W+MI+DGC + +T
Sbjct:    1 MATKRLARQLGLIRRKSIAPANGNLGR--SKSKQLFDYLIVIDFESTCWNDGKHHHSQEIIEFPAVLLNTSTGQIDSEFQAYVQPQEHPILSEFCMELTGIKQAQVDEGVPLKICLSQFCKWIHKIQQQKNIIFATGISEPSASEVKLCAFVTWSDWDLGVCLEYECKRKQLLKPVFLNSWIDLRATYKLFYRRKPKGLSGALQEVGIEFSGREHSGLDDSRNTALLAWKMIRDGCVMKIT 239
The following BLAST results are available for this feature:
BLAST of TCONS_00027639-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ERI24.199e-8149.38ERI1 exoribonuclease 2 OS=Homo sapiens GN=ERI2 PE=... [more]
back to top