TCONS_00027104-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00027104-protein
Unique Name	TCONS_00027104-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	671

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00027104-protein ID=TCONS_00027104-protein|Name=TCONS_00027104-protein|organism=Clytia hemisphaerica|type=polypeptide|length=671bp
MVDLKFWKTRKSHKPSREQENDEKAPLDAALKDEDLDRMLDEEESREAWG
NKVEFLLASVGLAVGVGNVWRFPYLCQKNGGGAFLIPYFTMMVLQGFPLF
IMEFAMGQRMKQSAVRCWNNVHPVFFGVGISCMLVSFAMCSYYIVVITWC
LYYFFVSFTSDLPWQRQYCGKYKEYTALQNNISSYIQSLRDSNATMGFIY
NETLRTDSEIKNFPDCCVVDPPQYFWYHNALQTSPLLERADHMNWKIFGC
LAAGWFVVYLCVLKGVKSSGKAAYFTATFPYVLLFILFIRGVTLEGAGDG
IKEFFRPKMSEIWKFQAWMDAATQIFYSLSIGFGALIAFSSYMPRKNNCV
NDALIVVLINCGTSLFAGIVTFSFLGYRQHKTGIEIEKIGTGPGLAFITY
CEAFLLMEVSPLWSILFFMMLVLLGIDSEFGTLEGAVAPLYDLGWVTMRK
EYFMAIIGGVFVVLEMIFCLGNGYYLFQIFDDYSVPVPLLIIALFQVVAL
GWVYGTDRISNDIEYMTGKRPHIFWRICWKYISPLILIVVFFGYIVSMIS
ETPTYRAYVGCEQDPFNPEISEGSEHWWKKFKYPWWAQLFAAILVLISVL
PIPYYFIKNWPKGGFTKIKEALSNPAIYYPDPSWKEPERRLGHKEMEKLI
RDEDRELLRKSLEAGKQKVAV

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_015228	XLOC_015228	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00027104	TCONS_00027104	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000175	Na/ntran_symport

Vocabulary: **Molecular Function**
Term	Definition
GO:0005328	neurotransmitter:sodium symporter activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

Vocabulary: **Biological Process**
Term	Definition
GO:0006836	neurotransmitter transport

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006836	neurotransmitter transport
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005328	neurotransmitter:sodium symporter activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000175	Sodium:neurotransmitter symporter	PRINTS	PR00176	NANEUSMPORT	coord: 83..102 score: 49.26 coord: 486..506 score: 33.8 coord: 127..153 score: 38.86 coord: 407..426 score: 55.49 coord: 354..374 score: 45.28 coord: 272..289 score: 54.92 coord: 54..75 score: 66.17 coord: 526..546 score: 32.32
IPR000175	Sodium:neurotransmitter symporter	PFAM	PF00209	SNF	coord: 46..610 e-value: 1.8E-169 score: 564.7
IPR000175	Sodium:neurotransmitter symporter	PROSITE	PS00610	NA_NEUROTRAN_SYMP_1	coord: 70..84
IPR000175	Sodium:neurotransmitter symporter	PROSITE	PS50267	NA_NEUROTRAN_SYMP_3	coord: 45..607 score: 89.147
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..32
None	No IPR available	SUPERFAMILY	161070	SNF-like	coord: 46..178 coord: 220..610

Blast

[Close]

BLAST of TCONS_00027104-protein vs. Swiss-Prot (Human)
Match: S6A13 (Sodium- and chloride-dependent GABA transporter 2 OS=Homo sapiens GN=SLC6A13 PE=1 SV=3)

HSP 1 Score: 389.037 bits (998), Expect = 3.350e-127
Identity = 230/634 (36.28%), Postives = 332/634 (52.37%), Query Frame = 0

Query:   14 KPSREQENDEKAPLDAALKDEDLDRMLDEEESREAWGNKVEFLLASVGLAVGVGNVWRFPYLCQKNGGGAFLIPYFTMMVLQGFPLFIMEFAMGQRMKQSAVRCWNNVHPVFFGVGISCMLVSFAMCSYYIVVITWCLYYFFVSFTSDLPWQRQYCGKYKEYTALQNNISSYIQSLRDSNATMGFIYNETLRTDSEIKNFPDCCVVDPPQYFWYHNALQTSPLLERADHMNWKIFGCLAAGWFVVYLCVLKGVKSSGKAAYFTATFPYVLLFILFIRGVTLEGAGDGIKEFFRPKMSEIWKFQAWMDAATQIFYSLSIGFGALIAFSSYMPRKNNCVNDALIVVLINCGTSLFAGIVTFSFLGYRQHKTGIEIEKIG-TGPGLAFITYCEAFLLMEVSPLWSILFFMMLVLLGIDSEFGTLEGAVAPLYDL-GWVTMRKEYFMAIIGGVFVV---LEMIFCLGNGYYLFQIFDDYSVP-VPLLIIALFQVVALGWVYGTDRISNDIEYMTGKRPHIFWRICWKYISPLILIVVFFGYIVSMISETP-TYRAYVGCEQDPFNPEISEGSEHWWKKFKYPWWAQLFAAILVLISVLPIPYYFIKNWP--KGGFTKIKEALSNPAIYYPDPSWKEPE 638
            + S    N E  P+   ++ ++ D  L+    R  W NK+EF+L+  G  +G+GNVWRFPYLC KNGGGAF IPY   +   G P+F++E A+GQ   Q  V  W  + P+F G+G +  ++   +  YYI+V+ W L+Y F SFT DLPW     G Y E+       + +    + +N +        L   SE    P   V++    FW    L+ S  ++    + W++  CL   W + Y C+ KGVKS+GK  YFTATFPY++L +L IRGVTL GA  GI+ +  P ++ +W  Q WMDA TQIF+S +I  G L A  SY    NNC  D + +  +N GTS  AG   FS LG+   + G+ I ++  +GPGLAFI Y  A +++  SPLW+  FF M+VLLG+DS+F  +E  V  L D+   V  +K     +I GV VV   + +I     G Y+FQ+FD Y+   + LL +A+F+ + + WVYG  R  ++IE M G RP    + CW +++P +    F   + S+I  TP TY                       KK+ YPWW      +L L S++ IP + +      KG F +    L  PA   P  +   P 
Sbjct:    4 RVSGTTSNGETKPVYPVMEKKEEDGTLE----RGHWNNKMEFVLSVAGEIIGLGNVWRFPYLCYKNGGGAFFIPYLVFLFTCGIPVFLLETALGQYTSQGGVTAWRKICPIFEGIGYASQMIVILLNVYYIIVLAWALFYLFSSFTIDLPWG----GCYHEWN------TEHCMEFQKTNGS--------LNGTSENATSP---VIE----FWERRVLKISDGIQHLGALRWELALCLLLAWVICYFCIWKGVKSTGKVVYFTATFPYLMLVVLLIRGVTLPGAAQGIQFYLYPNLTRLWDPQVWMDAGTQIFFSFAICLGCLTALGSYNKYHNNCYRDCIALCFLNSGTSFVAGFAIFSILGFMSQEQGVPISEVAESGPGLAFIAYPRAVVMLPFSPLWACCFFFMVVLLGLDSQFVCVESLVTALVDMYPHVFRKKNRREVLILGVSVVSFLVGLIMLTEGGMYVFQLFDYYAASGMCLLFVAIFESLCVAWVYGAKRFYDNIEDMIGYRPWPLIKYCWLFLTPAVCTATF---LFSLIKYTPLTYN----------------------KKYTYPWWGDALGWLLALSSMVCIPAWSLYRLGTLKGPFRERIRQLMCPAEDLPQRNPAGPS 583

The following BLAST results are available for this feature:

BLAST of TCONS_00027104-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00027104-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
S6A13	3.350e-127	36.28	Sodium- and chloride-dependent GABA transporter 2 ...	[more]

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TCONS_00027104-protein (polypeptide) - C. hemisphaerica