TCONS_00027075-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00027075-protein
Unique Name	TCONS_00027075-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	864

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00027075-protein ID=TCONS_00027075-protein|Name=TCONS_00027075-protein|organism=Clytia hemisphaerica|type=polypeptide|length=864bp
MAVIEFCFNSTLTPIWDHGISMCFYKTVQPIVVFILSLLVFCYHQYIRYK
CKQSRKKTVKDPQKRGLIQGAEDIEAIPVVDMGENDQDAPNKKSFKAFAF
PKLPTPFLYVVQLLLHGSIAVLPVIHIISTLIIEKDHVDGSHILAAILNF
LAWVVGFKALKKERKHYFVIKAKRHSVLMLLFWTVALLFECLIFFSLNKD
GSFLKHYQEDIKLLNLIIFSIKFALHTLTFLLGLHGPGLHKSKYDKVNDD
SKSKDKKDQSWVTDFWEKCQKLWPFVWPKDNWLRLRVLLCVGLLIAGRVI
NVFVPLYNKKIVNYLTNKSNKEDPWKMILMYTLFMFLQGGGIGSMGLLNN
LRSFIWIKVQQYTSRSVQTELFEHLHDLSLRWHLGRKTGEVIRMVDRGST
SIESLLSYILFQIAPTIVDIIVALVFFGAVFNGWFALIVFITMFLYIATT
IGITEWRTKYRRDMNEKDNVTKAVAVDSLLNFETVKYYNNEAFEVDRYTD
KITDYQATQWWVQMSLNFLNTGQNVVITVGLLVGMLYCGKLCVEDVLDVG
DFVLYITYVRQLYMPLNFFGTYYRLIQSAFIDMENMFDLMDQEIEIVDKN
NASDLKVNHGLVEFKNVSFHYDERKPVLQGVSFTVLPGTTTALVGPSGSG
KSTIIRLLFRFYEVQAGSIVLDGKDIRDVTQRSLRSKIGVVPQDTVLFND
SIKYNIAYGRVGSSDVQIKEAAASSDIHTKIITFPDAYETLVGERGLKLS
GGEKQRVAIARTLLKAPDIVLLDEATSALDTQTERNIQASLNRVCANKTT
VVVAHRLSTIIGADQILVLKDGLIVERGRHHELLEQEGLYYKMWNQQLQD
ENHPESPESDKKND

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_015218	XLOC_015218	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00027075	TCONS_00027075	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR003593	AAA+_ATPase
IPR003439	ABC_transporter-like
IPR032410	MTABC_N
IPR011527	ABC1_TM_dom
IPR017871	ABC_transporter_CS
IPR027417	P-loop_NTPase

Vocabulary: **Molecular Function**
Term	Definition
GO:0016887	ATPase activity
GO:0005524	ATP binding
GO:0042626	ATPase activity, coupled to transmembrane movement of substances

Vocabulary: **Biological Process**
Term	Definition
GO:0055085	transmembrane transport
GO:0006810	transport

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055085	transmembrane transport
biological_process	GO:0006810	transport
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0016887	ATPase activity
molecular_function	GO:0042626	ATPase activity, coupled to transmembrane movement of substances
molecular_function	GO:0005524	ATP binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003593	AAA+ ATPase domain	SMART	SM00382	AAA_5	coord: 637..823 e-value: 7.8E-18 score: 75.3
None	No IPR available	GENE3D	3.40.50.300		coord: 598..853 e-value: 2.4E-76 score: 256.0
None	No IPR available	GENE3D	1.20.1560.10		coord: 243..597 e-value: 5.7E-64 score: 215.5
None	No IPR available	CDD	cd03253	ABCC_ATM1_transporter	coord: 612..847 e-value: 2.43462E-148 score: 438.202
IPR003439	ABC transporter-like	PFAM	PF00005	ABC_tran	coord: 628..777 e-value: 1.9E-34 score: 119.0
IPR003439	ABC transporter-like	PROSITE	PS50893	ABC_TRANSPORTER_2	coord: 612..846 score: 23.676
IPR032410	Mitochondrial ABC-transporter, N-terminal five TM domain	PFAM	PF16185	MTABC_N	coord: 102..278 e-value: 1.1E-32 score: 113.4
IPR011527	ABC transporter type 1, transmembrane domain	PFAM	PF00664	ABC_membrane	coord: 288..566 e-value: 1.4E-42 score: 146.1
IPR011527	ABC transporter type 1, transmembrane domain	PROSITE	PS50929	ABC_TM1F	coord: 288..578 score: 38.992
IPR011527	ABC transporter type 1, transmembrane domain	SUPERFAMILY	90123	ABC transporter transmembrane region	coord: 268..595
IPR017871	ABC transporter, conserved site	PROSITE	PS00211	ABC_TRANSPORTER_1	coord: 749..763
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 603..848

Blast

[Close]

BLAST of TCONS_00027075-protein vs. Swiss-Prot (Human)
Match: ABCB6 (ATP-binding cassette sub-family B member 6, mitochondrial OS=Homo sapiens GN=ABCB6 PE=1 SV=1)

HSP 1 Score: 735.717 bits (1898), Expect = 0.000e+0
Identity = 386/743 (51.95%), Postives = 503/743 (67.70%), Query Frame = 0

Query:  143 ILAAILNFLAWVVGFKALKKERKHYFVIKAK------RHSVLMLLFWTVALLFECLIFFSLNKDGSFLKHYQEDIKLLNLIIFSI---KFALHTLTFLLGLHGPGLHKSKY-------DKVNDDSKSKDKKDQSWVTDFWEKCQKLWPFVWPKDN-WLRLRVLLCVGLLIAGRVINVFVPLYNKKIVNYLTNKSNKEDPWK----MILMYTLFMFLQGGGIGSMGLLNNLRSFIWIKVQQYTSRSVQTELFEHLHDLSLRWHLGRKTGEVIRMVDRGSTSIESLLSYILFQIAPTIVDIIVALVFFGAVFNGWFALIVFITMFLYIATTIGITEWRTKYRRDMNEKDNVTKAVAVDSLLNFETVKYYNNEAFEVDRYTDKITDYQATQWWVQMSLNFLNTGQNVVITVGLLVGMLYCGKLCVEDVLDVGDFVLYITYVRQLYMPLNFFGTYYRLIQSAFIDMENMFDLMDQEIEIVDKNNASDLKVNHGLVEFKNVSFHYDERKPVLQGVSFTVLPGTTTALVGPSGSGKSTIIRLLFRFYEVQAGSIVLDGKDIRDVTQRSLRSKIGVVPQDTVLFNDSIKYNIAYGRVGSSDVQIKEAAASSDIHTKIITFPDAYETLVGERGLKLSGGEKQRVAIARTLLKAPDIVLLDEATSALDTQTERNIQASLNRVCANKTTVVVAHRLSTIIGADQILVLKDGLIVERGRHHELLEQEGLYYKMWN-QQLQDENHPES-PESDKK 862
            +LA++L  LA   G   L  ER       A       RHS  +LL WTVA   E L   S N      + +     L   + FS+   ++ +    F+LGL  PGL    Y       D+  + S+ +    QS   DF  K + L  ++WP+ +  L+L VL+C+GL+   R +NV VP++ + IVN LT K+    PW      +  Y    FLQGGG GS G ++NLR+F+WI+VQQ+TSR V+  +F HLH+LSLRWHLGR+TGEV+R+ DRG++S+  LLSY++F + PT+ DII+ +++F   FN WF LIVF+ M LY+  TI +TEWRTK+RR MN ++N T+A AVDSLLNFETVKYYN E++EV+RY + I  YQ  +W    SL  LN  QN+VI +GLL G L C     E  L VGD+VL+ TY+ QLYMPLN+FGTYYR+IQ+ FIDMENMFDL+ +E E+ D   A  L+   G +EF+NV F Y + +  LQ VSFTV+PG T ALVGPSG+GKSTI+RLLFRFY++ +G I +DG+DI  VTQ SLRS IGVVPQDTVLFND+I  NI YGRV + + +++ AA ++ IH  I+ FP+ Y T VGERGLKLSGGEKQRVAIART+LKAP I+LLDEATSALDT  ER IQASL +VCAN+TT+VVAHRLST++ ADQILV+KDG IVERGRH  LL + G+Y  MW  QQ Q+E   ++ P++ ++
Sbjct:  108 LLASVLESLAGACGLWLLVVERSQARQRLAMGIWIKFRHSPGLLLLWTVAFAAENLALVSWNSP----QWWWARADLGQQVQFSLWVLRYVVSGGLFVLGLWAPGLRPQSYTLQVHEEDQDVERSQVRSAAQQSTWRDFGRKLRLLSGYLWPRGSPALQLVVLICLGLMGLERALNVLVPIFYRNIVNLLTEKA----PWNSLAWTVTSYVFLKFLQGGGTGSTGFVSNLRTFLWIRVQQFTSRRVELLIFSHLHELSLRWHLGRRTGEVLRIADRGTSSVTGLLSYLVFNVIPTLADIIIGIIYFSMFFNAWFGLIVFLCMSLYLTLTIVVTEWRTKFRRAMNTQENATRARAVDSLLNFETVKYYNAESYEVERYREAIIKYQGLEWKSSASLVLLNQTQNLVIGLGLLAGSLLCAYFVTEQKLQVGDYVLFGTYIIQLYMPLNWFGTYYRMIQTNFIDMENMFDLLKEETEVKDLPGAGPLRFQKGRIEFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVNADQILVIKDGCIVERGRHEALLSRGGVYADMWQLQQGQEETSEDTKPQTMER 842

The following BLAST results are available for this feature:

BLAST of TCONS_00027075-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00027075-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
ABCB6	0.000e+0	51.95	ATP-binding cassette sub-family B member 6, mitoch...	[more]

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TCONS_00027075-protein (polypeptide) - C. hemisphaerica