TCONS_00026930-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00026930-protein
Unique NameTCONS_00026930-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length403

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00026930-protein ID=TCONS_00026930-protein|Name=TCONS_00026930-protein|organism=Clytia hemisphaerica|type=polypeptide|length=403bp
MNSSIKELFIWSLNNGVQIRGLTIKDFPLSGRGVMTTRHINKNDLIIKIP
RRFLITFDTVLISMKWCIRDESNHGLTAKDLFLFFILVEKWKGKASKFRI
YIESIPETYTTPSCIPESKASLLPDFVSLERNKQRAKIAGHFKRLTHFLT
AYQSKMKEKRLNFDDVMWAWNVVNTRSVYLNPRNLTCSLDAFTKLSEVDF
ALAPLLDMLNHESGAQVEAKFNTKSNHYEIRTFDSYEPKEQVFINYGSHG
NRMLFFEYGFILPNNIHAVCPISRHLFLIHFPMNSQCQDSELLKIGISLE
KMNCTREGYFNWAFINAAHILFEQHSPDIRKLPSQCVGGRCKVYERVLNL
IHDLEKFYDNHLSKLRNEQNGALRQVFYLLENERNILYLTKEKWTTDCQI
MLS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_015121XLOC_015121Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00026930TCONS_00026930Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001214SET_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001214SET domainPFAMPF00856SETcoord: 31..247
e-value: 1.3E-12
score: 48.3
IPR001214SET domainPROSITEPS50280SETcoord: 20..247
score: 11.574
NoneNo IPR availableGENE3D3.90.1410.10coord: 1..261
e-value: 4.8E-44
score: 150.3
NoneNo IPR availableSUPERFAMILY82199SET domaincoord: 4..265

Blast
[Close]
BLAST of TCONS_00026930-protein vs. Swiss-Prot (Human)
Match: SETD4 (SET domain-containing protein 4 OS=Homo sapiens GN=SETD4 PE=2 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 1.428e-46
Identity = 102/300 (34.00%), Postives = 151/300 (50.33%), Query Frame = 0 
Query:    1 MNSSIKELFI----WSLNNGVQIRGLTIKDFPLSGRGVMTTRHINKNDLIIKIPRRFLITFDTVLISMKWCIRDESNHGLTAKDLFLFFILVEKWKGKASKFRIYIESIPETYTTPSCIPESKASLLPDFVSLERNKQRAKIAGHFKRLTHFLTAYQSKMKEKR---LNFDDVMWAWNVVNTRSVYLNPRNLTCSLDAFTKLSEVD-FALAPLLDMLNHESGAQVEAKFNTKSNHYEIRTFDSYEPKEQVFINYGSHGNRMLFFEYGFILPNNIHAVCPISRHLFLIHFPMNSQCQDSEL 292
            +N S K  FI    W      Q   L    FP +GRG+M+   + +  +II +P   L+T DTV+ S       +     +       F++ EK  G  S ++ Y+E +P+ YT P C+     +LLP  +  +  +QRA +   F     F ++ Q    E      ++  ++WAW  VNTR+VYL PR   C L A     E D  ALAP LD+LNH    QV+A FN +++ YEIRT   +   E+VFI YG H N+ LF EYGF+  +N HA   +SR + + + P   +  D ++
Sbjct:   25 VNESHKSEFIELRKWLKARKFQDSNLAPACFPGTGRGLMSQTSLQEGQMIISLPESCLLTTDTVIRSYLGAYITKWKPPPSPLLALCTFLVSEKHAGHRSLWKPYLEILPKAYTCPVCLEPEVVNLLPKSLKAKAEEQRAHVQEFFASSRDFFSSLQPLFAEAVDSIFSYSALLWAWCTVNTRAVYLRPRQREC-LSA-----EPDTCALAPYLDLLNHSPHVQVKAAFNEETHSYEIRTTSRWRKHEEVFICYGPHDNQRLFLEYGFVSVHNPHACVYVSREILVKYLPSTDKQMDKKI 318
The following BLAST results are available for this feature:
BLAST of TCONS_00026930-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SETD41.428e-4634.00SET domain-containing protein 4 OS=Homo sapiens GN... [more]
back to top