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Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00025414-protein ID=TCONS_00025414-protein|Name=TCONS_00025414-protein|organism=Clytia hemisphaerica|type=polypeptide|length=534bp
MLQQNGYDFKLLEPNRREGLECSICMLLLKGAFELPCYHTFCKGCLEKWK
TTQKLDKKPVTCPLCNAIQNSTNLGHAIGTVDRLIKTTLDVHCKQQKDGC
EWVGKICDYFEQHTRWCQFIKVNCRKSVLCDKMLLRKDMLEHEKSCGYQH
LNCQWCDEFHQKNQLEDHYNACRGFPVKCSNEDCQKTFPRKDFKYLIEDH
LATECDFQEVECQFFSNGCPDKFPRNQQSEHNQDQMPFHLSLVIKELRET
KKQLVETQEKEKSLEQIIRNQREQLGESVIDSPQPEISIDSRSFVGTSVN
NEPTESSNNIEDTIFQLQKSIKALIEEPHVNSASNENCDQPTVSSTCYST
IRRPYFHARRRCTPAVAANIPGESEGNLLNHPSSTSSDSSLDLDQIAFQT
IKYNDHKKVGQNKTYLKLNMRTERINLDFRVEFPKTFEHIPERLRSRCRL
HNESFAFSTGIKFSVLYILMPFGEYKQDQFSFVQSVEFVGKRGHLILDKS
SDYFKNFRTLNMRLNHFFERDEDDNFILCMLVKY Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008270 | zinc ion binding |
| GO:0046872 | metal ion binding |
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0046872 |
metal ion binding |
| molecular_function |
GO:0005515 |
protein binding |
| molecular_function |
GO:0008270 |
zinc ion binding |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | COILS | Coil | Coil | coord: 240..274 |
| None | No IPR available | SUPERFAMILY | 57850 | RING/U-box | coord: 15..69 |
| IPR001841 | Zinc finger, RING-type | SMART | SM00184 | ring_2 | coord: 22..65
e-value: 3.3E-7
score: 39.9 |
| IPR001841 | Zinc finger, RING-type | PROSITE | PS50089 | ZF_RING_2 | coord: 22..66
score: 12.327 |
| IPR001841 | Zinc finger, RING-type | CDD | cd00162 | RING | coord: 21..67
e-value: 1.32762E-6
score: 44.744 |
| IPR013083 | Zinc finger, RING/FYVE/PHD-type | GENE3D | 3.30.40.10 | | coord: 85..133
e-value: 1.8E-8
score: 34.0
coord: 157..182
e-value: 5.7E-4
score: 19.5
coord: 134..156
e-value: 0.0018
score: 18.0
coord: 183..231
e-value: 1.7E-9
score: 37.3 |
| IPR013083 | Zinc finger, RING/FYVE/PHD-type | GENE3D | 3.30.40.10 | | coord: 9..84
e-value: 6.4E-13
score: 47.5 |
| IPR001293 | Zinc finger, TRAF-type | PFAM | PF02176 | zf-TRAF | coord: 168..231
e-value: 1.5E-12
score: 47.9 |
| IPR001293 | Zinc finger, TRAF-type | PROSITE | PS50145 | ZF_TRAF | coord: 168..227
score: 11.437 |
| IPR001293 | Zinc finger, TRAF-type | PROSITE | PS50145 | ZF_TRAF | coord: 113..156
score: 8.793 |
| IPR018957 | Zinc finger, C3HC4 RING-type | PFAM | PF00097 | zf-C3HC4 | coord: 22..65
e-value: 3.1E-7
score: 30.1 |
| IPR017907 | Zinc finger, RING-type, conserved site | PROSITE | PS00518 | ZF_RING_1 | coord: 37..46 |
| IPR008974 | TRAF-like | SUPERFAMILY | 49599 | TRAF domain-like | coord: 151..207 |
Blast
The following BLAST results are available for this feature:
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