TCONS_00024722-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00024722-protein
Unique NameTCONS_00024722-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length191

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00024722-protein ID=TCONS_00024722-protein|Name=TCONS_00024722-protein|organism=Clytia hemisphaerica|type=polypeptide|length=191bp
MELPDRLYSKAEFIETASGNKVSRQSVLCGSQNIVLNGKTIIMSECIVRG
DLANVRIGRFCVLSSRSVIRPPFKRFSKGGAFFPLHIGDHVFVKEDSIIN
AAQIGSHVYIGKNCVIGRRSVLKDCCVIADNTVIPPETVVPPFTIMAGSP
ARVVGELPECTQDNMVEMTKSFFNHFKVDPATVKANTPTRR
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_013887XLOC_013887Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00024722TCONS_00024722Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001451Hexapep
IPR011004Trimer_LpxA-like
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.160.10.10coord: 7..183
e-value: 4.7E-32
score: 110.2
NoneNo IPR availableCDDcd03359LbH_Dynactin_5coord: 13..173
e-value: 5.90623E-97
score: 280.255
IPR001451Hexapeptide repeatPFAMPF00132Hexapepcoord: 107..139
e-value: 3.3E-6
score: 26.5
IPR011004Trimeric LpxA-likeSUPERFAMILY51161Trimeric LpxA-like enzymescoord: 12..176

Blast
[Close]
BLAST of TCONS_00024722-protein vs. Swiss-Prot (Human)
Match: DCTN5 (Dynactin subunit 5 OS=Homo sapiens GN=DCTN5 PE=1 SV=1)

HSP 1 Score: 287.73 bits (735), Expect = 1.773e-100
Identity = 131/176 (74.43%), Postives = 158/176 (89.77%), Query Frame = 0 
Query:    1 MELPDRLYSKAEFIETASGNKVSRQSVLCGSQNIVLNGKTIIMSECIVRGDLANVRIGRFCVLSSRSVIRPPFKRFSKGGAFFPLHIGDHVFVKEDSIINAAQIGSHVYIGKNCVIGRRSVLKDCCVIADNTVIPPETVVPPFTIMAGSPARVVGELPECTQDNMVEMTKSFFNHF 176
            MEL + LY+K+E+IETASGNKVSRQSVLCGSQNIVLNGKTI+M++CI+RGDLANVR+GR CV+ SRSVIRPPFK+FSKG AFFPLHIGDHVF++ED ++NAAQIGS+V++GKNCVIGRR VLKDCC I DNTV+PPETVVPPFT+ +G P    GELPECTQ+ M+++TKS++  F
Sbjct:    1 MELGELLYNKSEYIETASGNKVSRQSVLCGSQNIVLNGKTIVMNDCIIRGDLANVRVGRHCVVKSRSVIRPPFKKFSKGVAFFPLHIGDHVFIEEDCVVNAAQIGSYVHVGKNCVIGRRCVLKDCCKILDNTVLPPETVVPPFTVFSGCPGLFSGELPECTQELMIDVTKSYYQKF 176
The following BLAST results are available for this feature:
BLAST of TCONS_00024722-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DCTN51.773e-10074.43Dynactin subunit 5 OS=Homo sapiens GN=DCTN5 PE=1 S... [more]
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