TCONS_00024603-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00024603-protein
Unique Name	TCONS_00024603-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	884

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00024603-protein ID=TCONS_00024603-protein|Name=TCONS_00024603-protein|organism=Clytia hemisphaerica|type=polypeptide|length=884bp
MPGIKRKSTPGKDNQQTISRFFKPKSTDANNNGGGQNHEKTPKRQKKVPV
IQILDDDIAPSQSPAKPSSLQKQNKLPHDEIKKENDGNVNQSLTQPTTHK
ITVSEKCLQKLARYSIDNTLSTNGSMTPYFTKTTSEESIETPSSMEQSNI
SKSQLNNSNLQKFAHSPSIVHKEMAQTSTQSNFDETVHRKIFDQNNNFSK
LGTTEPPPPPSSNTKKKGKIVYTPLEKQVLELRKQSHGAMLFVECGYKYR
FFGQDAEVASKELNICCHMDHNFMTASIPVHRLNVHLSRLVEKGYKVGVV
NQTETAALKATGDNKNAPFTRQITNIYTKATFIDREEMNHDGGKANPSYI
LAINQSKKSCFNFIAVNPTTSEVVCEQFSTKSISDLSVALETIFSCLKPC
ELVLPKSSLDESVETFIARYVSNSIEGVRTERLIESPFTNVTKESLKRLD
PEFNTQSLLSCACQLESYLSQFKLDGILKSSENFRKFRTINQSMVLDGIT
LRNLEIFENNTDGGVRGSLFSVLNHTYTPFGRRLLRRWIANPLLSKDEIQ
DRLIGITEMVENWESDYMKSLRRGLAGSIDLENGLTIISLKKASPSKFIK
IVSELEKLRTLFFKYSEEISSKTKSKLLRELSSQIPQHLGTRLDASLNKL
NRTEADRNNKNNVFKQPELDYPEVLKAKNEIKSIESKLEEYRRSRLPRAL
NKLSVEYKCVSGLEYLVEVKNNEVKSISSDWIKISATKQVTRFRPPFVDE
HFKKLCRAREELSISSNEAWISFLDSFSYLHXISSNEAWISFLDSFSYLH
YEACKRAIEKVAIFDCLISLSIVAKQPGYCCPIIDDSDCIEIQDGRHPVI
EGLLASGQQYVANDTKLSNEKKAMLISGPNMGGK

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_013816	XLOC_013816	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00024603	TCONS_00024603	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR007696	DNA_mismatch_repair_MutS_core
IPR007860	DNA_mmatch_repair_MutS_con_dom
IPR016151	DNA_mismatch_repair_MutS_N
IPR007695	DNA_mismatch_repair_MutS-lik_N
IPR027417	P-loop_NTPase

Vocabulary: **Molecular Function**
Term	Definition
GO:0030983	mismatched DNA binding
GO:0005524	ATP binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006298	mismatch repair

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006298	mismatch repair
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0030983	mismatched DNA binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 674..694
None	No IPR available	GENE3D	1.10.1420.10		coord: 494..828 e-value: 1.0E-40 score: 139.6
None	No IPR available	PIRSF	PIRSF037677	Msh6	coord: 5..884 e-value: 8.1E-83 score: 276.9
None	No IPR available	GENE3D	3.40.50.300		coord: 829..884 e-value: 9.1E-7 score: 27.5
IPR007696	DNA mismatch repair protein MutS, core	SMART	SM00533	DNAend	coord: 514..853 e-value: 1.5E-40 score: 150.7
IPR007696	DNA mismatch repair protein MutS, core	PFAM	PF05192	MutS_III	coord: 500..821 e-value: 1.5E-30 score: 106.8
IPR007696	DNA mismatch repair protein MutS, core	SUPERFAMILY	48334	DNA repair protein MutS, domain III	coord: 497..826
IPR007860	DNA mismatch repair protein MutS, connector domain	PFAM	PF05188	MutS_II	coord: 348..465 e-value: 1.3E-5 score: 25.4
IPR007860	DNA mismatch repair protein MutS, connector domain	GENE3D	3.30.420.110		coord: 350..492 e-value: 9.9E-12 score: 44.7
IPR007860	DNA mismatch repair protein MutS, connector domain	SUPERFAMILY	53150	DNA repair protein MutS, domain II	coord: 346..509
IPR016151	DNA mismatch repair protein MutS, N-terminal	GENE3D	3.40.1170.10		coord: 210..349 e-value: 1.9E-40 score: 137.4
IPR016151	DNA mismatch repair protein MutS, N-terminal	SUPERFAMILY	55271	DNA repair protein MutS, domain I	coord: 221..331
IPR007695	DNA mismatch repair protein MutS-like, N-terminal	PFAM	PF01624	MutS_I	coord: 223..335 e-value: 5.5E-29 score: 100.6
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 829..884

Blast

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BLAST of TCONS_00024603-protein vs. Swiss-Prot (Human)
Match: MSH3 (DNA mismatch repair protein Msh3 OS=Homo sapiens GN=MSH3 PE=1 SV=4)

HSP 1 Score: 462.996 bits (1190), Expect = 7.131e-147
Identity = 274/714 (38.38%), Postives = 404/714 (56.58%), Query Frame = 0

Query:  211 SSNTKKKGKIVYTPLEKQVLELRKQSHGAMLFVECGYKYRFFGQDAEVASKELNICCHMDHNFMTASIPVHRLNVHLSRLVEKGYKVGVVNQTETAALKATGDNKNAPFTRQITNIYTKATFI-----------DREEMNHDGGKANPSYILAINQSKKSC---------FNFIAVNPTTSEVVCEQFSTKSISDLSVALETIFSCLKPCELVLPKSSLDESVETFIARYVSNSIEG--VRTERL------IESPFTNVTKESLKRLDPEFNTQSLLSCACQLE-----------SYLSQFKLDGILKSSENFRKFRTINQSMVLDGITLRNLEIFENNTDGGVRGSLFSVLNHTYTPFGRRLLRRWIANPLLSKDEIQDRLIGITEMVENWESDYMKSLRRGLAGSIDLENGLTIISLKKASPSKFIKIVSELEKLRTLFFKYSEEISSKTKSKLLRELSSQIPQHLGTRLDASLNKLNRTEADRNNKNNVFKQPELDYPEVLKAKNEIKSIESKLEEYRRSRLPRALNKLSVEYKCVSGLEYLVEVKNNEVKSISSDWIKISATKQVTRFRPPFVDEHFKKLCRAREELSISSNEAWISFLDSFSYLHXISSNEAWISFLDSFSYLHYEACKRAIEKVAIFDCLISLSIVAKQPGYCCPIIDDSDCIEIQDGRHPVIEGLLASGQQYVANDTKLSNE-KKAMLISGPNMGGK 884
            S +  K+ K +YTPLE Q +E+++Q   A+L VECGYKYRFFG+DAE+A++ELNI CH+DHNFMTASIP HRL VH+ RLV KGYKVGVV QTETAALKA GDN+++ F+R++T +YTK+T I           D   ++      + SY+L I+++K++             + V P T EVV + F   +       LET  S L+P EL+LP S+L E  E  I R  S S++   +R ER+          F  VT E   +   +     ++S    LE            YL +F L+ +L   ENF++  +  + M ++G TLRNLEI +N TD   +GSL  VL+HT T FGRR L++W+  PLL   EI  RL  ++E++ + ES     +   L    D+E GL  I  KK S  +F  IV  L  L++ F      ++S  +S LLR +  +IP+ L + ++  L  LN   A   +K  +FK    D+P + K K+EI+ +  ++  + +  + + L   S +Y  VSG E+++E+KN+ V  I +DW+K+ +TK V+RF  PF+ E+++ L + RE+L +  +  W+ FL+ FS                     HY +  +A+  +A  DC+ SL+ VAKQ  YC P + +   I I++GRHPVI+ LL    QYV N+T LS + ++ M+I+GPNMGGK
Sbjct:  218 SKSANKRSKSIYTPLELQYIEMKQQHKDAVLCVECGYKYRFFGEDAEIAARELNIYCHLDHNFMTASIPTHRLFVHVRRLVAKGYKVGVVKQTETAALKAIGDNRSSLFSRKLTALYTKSTLIGEDVNPLIKLDDAVNVDEIMTDTSTSYLLCISENKENVRDKKKGNIFIGIVGVQPATGEVVFDSFQDSASRS---ELETRMSSLQPVELLLP-SALSEQTEALIHRATSVSVQDDRIRVERMDNIYFEYSHAFQAVT-EFYAKDTVDIKGSQIISGIVNLEKPVICSLAAIIKYLKEFNLEKMLSKPENFKQLSSKMEFMTINGTTLRNLEILQNQTDMKTKGSLLWVLDHTKTSFGRRKLKKWVTQPLLKLREINARLDAVSEVLHS-ESSVFGQIENHLRKLPDIERGLCSIYHKKCSTQEFFLIVKTLYHLKSEFQAIIPAVNSHIQSDLLRTVILEIPELL-SPVEHYLKILNEQAAKVGDKTELFKDLS-DFPLIKKRKDEIQGVIDEIRMHLQ-EIRKILKNPSAQYVTVSGQEFMIEIKNSAVSCIPTDWVKVGSTKAVSRFHSPFIVENYRHLNQLREQLVLDCSAEWLDFLEKFSE--------------------HYHSLCKAVHHLATVDCIFSLAKVAKQGDYCRPTVQEERKIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGK 902

The following BLAST results are available for this feature:

BLAST of TCONS_00024603-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00024603-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
MSH3	7.131e-147	38.38	DNA mismatch repair protein Msh3 OS=Homo sapiens G...	[more]

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TCONS_00024603-protein (polypeptide) - C. hemisphaerica