TCONS_00024032-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00024032-protein
Unique NameTCONS_00024032-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length803

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00024032-protein ID=TCONS_00024032-protein|Name=TCONS_00024032-protein|organism=Clytia hemisphaerica|type=polypeptide|length=803bp
MSTKVFLLAAFFFSHIFTGVHLSKPCPKQCSCHSSWLRGVSSVVVDCSKR
GLTSIPTKGVSRYVTSLVLNDNLITKIPRNAFKRYRYLREIYLYKNFIAS
IHPQAFRGLRRLKELSLHSNQLSVIENGTFAGLRRLDRLYLFTNLLQGIN
NGVFQGLANLKTLYLHENLLRSIPPQSFKELKKLNLLTLHRNHIQVLHTG
SMEGLHSVTSIFLHQNKIRKVENNAFAGCKNVVKLQLGINQLSNITKEMF
IGLESLKELYLDKNQIGLIENPDVFTHVSHITKLVLLGNRLTDLLPNTFE
RLYNLRILSISGNQLRELRPGMFGGLPLLHTLLLQENKIQWIEPYAFQGL
TALQRLYLFRNEIFYVQERTFFGLFALVELNLGVNKIEGLAKDAFLGLPR
LVSLQLNSNFINTIRFGTFAKLRSLYRLVLYFNKVTRVEKGAFDDCKRLG
SLLWYPPLTLVKSSRTLKEIPSNDFKCDCQAVWLKQWLTQKTSKVGSIFC
NGPATLKGRNVTEVDDEHFTCAPIFMAIEPKLTLLKSGKTAQIRCNVNAL
AEYTWIKNGSVLTNQFKTFQTNTGALFVHNVTEADSGEYICLVKTENATL
AGSSIVKVGVQPSIIGNKEEIVDVQKENENVVLICPNEGFPKPLVFWHYA
GKLIQDGSEDRFIGFDGRLILTKMTAKNAGVYVCTANNEFGMDKKTFYLR
VSAEKESYCEPTCATGYECKMKYTCQCSKERALNDGMCSSTVEGRSFGSG
DGPENNEIGDNEANDVDDDFDNDEFSRKSFTDVSHSIMTTTSSTTPKRGG
PVV
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_013502XLOC_013502Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00024032TCONS_00024032Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003599Ig_sub
IPR000483Cys-rich_flank_reg_C
IPR003591Leu-rich_rpt_typical-subtyp
IPR003598Ig_sub2
IPR032675L_dom-like
IPR013151Immunoglobulin
IPR001611Leu-rich_rpt
IPR013783Ig-like_fold
IPR007110Ig-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003599Immunoglobulin subtypeSMARTSM00409IG_3ccoord: 620..702
e-value: 6.5E-5
score: 32.3
coord: 530..611
e-value: 7.0E-8
score: 42.2
IPR000483Cysteine-rich flanking region, C-terminalSMARTSM00082lrrct1coord: 473..522
e-value: 1.4E-7
score: 41.2
NoneNo IPR availableSMARTSM00365LRR_sd22_2coord: 157..178
e-value: 180.0
score: 5.3
coord: 253..274
e-value: 15.0
score: 14.0
coord: 205..226
e-value: 4.1
score: 16.4
coord: 109..130
e-value: 31.0
score: 11.5
NoneNo IPR availablePFAMPF13927Ig_3coord: 612..688
e-value: 5.0E-9
score: 36.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 744..803
IPR003591Leucine-rich repeat, typical subtypeSMARTSM00369LRR_typ_2coord: 133..156
e-value: 8.3
score: 13.9
coord: 181..204
e-value: 8.1
score: 14.0
coord: 422..445
e-value: 5.5
score: 15.4
coord: 65..84
e-value: 84.0
score: 5.7
coord: 302..325
e-value: 3.8E-4
score: 29.8
coord: 205..228
e-value: 2.7
score: 17.0
coord: 350..373
e-value: 4.8
score: 15.9
coord: 326..349
e-value: 0.12
score: 21.5
coord: 278..301
e-value: 82.0
score: 5.8
coord: 109..132
e-value: 4.8E-4
score: 29.5
coord: 253..277
e-value: 5.0
score: 15.7
coord: 157..180
e-value: 6.7E-4
score: 29.0
coord: 398..421
e-value: 2.1
score: 17.3
coord: 88..108
e-value: 50.0
score: 7.5
coord: 374..397
e-value: 4.3
score: 16.2
IPR003598Immunoglobulin subtype 2SMARTSM00408igc2_5coord: 626..691
e-value: 1.0E-9
score: 48.3
coord: 536..598
e-value: 4.2E-5
score: 33.0
IPR032675Leucine-rich repeat domain, L domain-likeGENE3D3.80.10.10coord: 21..198
e-value: 2.5E-40
score: 137.3
IPR032675Leucine-rich repeat domain, L domain-likeGENE3D3.80.10.10coord: 199..315
e-value: 6.4E-22
score: 77.1
IPR032675Leucine-rich repeat domain, L domain-likeGENE3D3.80.10.10coord: 316..522
e-value: 5.8E-36
score: 123.2
IPR032675Leucine-rich repeat domain, L domain-likeSUPERFAMILY52058L domain-likecoord: 270..521
IPR032675Leucine-rich repeat domain, L domain-likeSUPERFAMILY52058L domain-likecoord: 29..362
IPR013151ImmunoglobulinPFAMPF00047igcoord: 529..596
e-value: 9.4E-10
score: 38.4
IPR001611Leucine-rich repeatPFAMPF13855LRR_8coord: 399..452
e-value: 4.8E-8
score: 32.5
coord: 304..363
e-value: 8.6E-15
score: 54.2
coord: 64..122
e-value: 7.0E-14
score: 51.2
coord: 159..218
e-value: 2.1E-13
score: 49.7
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 376..397
score: 6.341
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 63..84
score: 5.563
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 183..204
score: 5.063
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 280..301
score: 5.317
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 328..349
score: 6.164
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 352..373
score: 4.555
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 159..180
score: 7.935
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 135..156
score: 4.978
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 111..132
score: 7.104
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 255..276
score: 6.665
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 207..228
score: 5.356
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 231..252
score: 4.801
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 304..325
score: 6.31
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 400..421
score: 5.225
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 87..108
score: 5.379
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 613..715
e-value: 3.2E-16
score: 58.8
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 523..612
e-value: 1.5E-12
score: 46.8
IPR007110Immunoglobulin-like domainPROSITEPS50835IG_LIKEcoord: 523..601
score: 10.48
IPR007110Immunoglobulin-like domainPROSITEPS50835IG_LIKEcoord: 612..702
score: 9.573
IPR007110Immunoglobulin-like domainSUPERFAMILY48726Immunoglobulincoord: 625..702
IPR007110Immunoglobulin-like domainSUPERFAMILY48726Immunoglobulincoord: 529..615

Blast
[Close]
BLAST of TCONS_00024032-protein vs. Swiss-Prot (Human)
Match: LRIG3 (Leucine-rich repeats and immunoglobulin-like domains protein 3 OS=Homo sapiens GN=LRIG3 PE=2 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 5.920e-53
Identity = 194/744 (26.08%), Postives = 312/744 (41.94%), Query Frame = 0 
Query:   18 TGVHLSKPCPKQCSCHSSWLRGVSSVVVDCSKRGLTSIPTKGVSRYVTSLVLNDNLITKIPRNAFKRYRYLREI-----------------------YLYKNFIASIHPQAFRGLRRLKELSLHSNQLSVIENGTFAGLRRLDRLYLFTNLLQGINNGVFQGLAN-LKTLYLHENLLRSIPPQSFKELKKLNLLTLHRNHIQVLHTGSMEGLHSVTSIFLHQNKIRKVENNAFAGCKNVVKLQLGINQLSNITKEMFIGLESLKELYLDKNQIGLIENPDVFTHVSHITKLVLLGNRLTDLLPNTFERLYNLRILSISGNQLRELRPGMFGGLPLLHTLLLQENKIQWIEPYAFQGLTALQRLYLFRNEIFYVQER---TFFGLFALVELNLGVNKIEGLAKDAFLGLPRLVSLQLNSNFINTIRFGTFAKLRSLYRLVLYFNKVTRVEKGAFDDCKRLGSLLWYPPLTLVKSSRTLKEIPSNDFKCDCQAVWLKQWLTQKT-SKVGSIFCNGPATLKGRNVTEVDDEHFTCAPIF---MAIEPKLTLLKSGKTAQIRCNVNALAE----YTWIKNGSVLTN-----------QFKTFQTNTGALFVHNVTEADSGEYICLVKTE-NATLAGSSIVKVGVQPSIIGNKEEIVDVQKENENVVLICPNEGFPKPLVFWHYAGKLIQDGSEDR---FIGFDGRLILTKMTAKNAGVYVCTANNEFGMDKKTFYLRVSAEKESYCEP 711
            +GV   +PCP  C C           ++DCS++ L  +P + +  +V  L L+ N ++ I  ++    + LRE+                        L  N I  I P+  +  + L+ L L SN +S ++   F  L +L  LYL +N +  +  G F  LAN L  L L+ N + +IPP+ FK L +L  L L+RN I+ +   + +GL ++ S+ + +N + K+ + AF G  N+  LQL  N L+ ITK    GL  L+EL+L +N I                      NR++   P+ +E    L  L ++ N L  L    F GL LL+TL +  N++ +I   AF+GL++L+ L L  NEI +  E     F GL  L  L L  N+I  + K AF GL  L  L L+ N I +++   F++++ L +L L                    SLL                       CDCQ  WL QW+ +       +  C  P  LKGR++  V  + F C       + ++P+      G      C+  + ++    + W K+  +L +           Q       T  L +  V  A  G+Y C++     ++ +  + + V + PS      ++    +      L C   G P P + W   G      + +R    +  D    +  +  ++ GVY CTA N  G       L V  E  S+  P
Sbjct:   39 SGVAAERPCPTTCRCLGD--------LLDCSRKRLARLP-EPLPSWVARLDLSHNRLSFIKASSMSHLQSLREVKLNNNELETIPNLGPVSANITLLSLAGNRIVEILPEHLKEFQSLETLDLSSNNISELQTA-FPAL-QLKYLYLNSNRVTSMEPGYFDNLANTLLVLKLNRNRISAIPPKMFK-LPQLQHLELNRNKIKNVDGLTFQGLGALKSLKMQRNGVTKLMDGAFWGLSNMEILQLDHNNLTEITKGWLYGLLMLQELHLSQNAI----------------------NRIS---PDAWEFCQKLSELDLTFNHLSRLDDSSFLGLSLLNTLHIGNNRVSYIADCAFRGLSSLKTLDLKNNEISWTIEDMNGAFSGLDKLRRLILQGNRIRSITKKAFTGLDALEHLDLSDNAIMSLQGNAFSQMKKLQQLHL-----------------NTSSLL-----------------------CDCQLKWLPQWVAENNFQSFVNASCAHPQLLKGRSIFAVSPDGFVCDDFPKPQITVQPETQSAIKGSNLSFICSAASSSDSPMTFAWKKDNELLHDAEMENYAHLRAQGGEVMEYTTILRLREVEFASEGKYQCVISNHFGSSYSVKAKLTVNMLPSFTKTPMDL--TIRAGAMARLECAAVGHPAPQIAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKIEDIGVYSCTAQNSAGSISANATLTV-LETPSFLRP 702
The following BLAST results are available for this feature:
BLAST of TCONS_00024032-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LRIG35.920e-5326.08Leucine-rich repeats and immunoglobulin-like domai... [more]
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