TCONS_00023687-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00023687-protein
Unique Name	TCONS_00023687-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	661

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00023687-protein ID=TCONS_00023687-protein|Name=TCONS_00023687-protein|organism=Clytia hemisphaerica|type=polypeptide|length=661bp
MDEYEDFSREEIIHFCERLQKKLKKYEKKLSDLVSAYKDLAEEKKLLEDS
LKAVKQERRDKDDKTFLQKSKDFITKSKQPVVPPQPPENNDAESGESAEK
KLNVVTKAFQTLTEKKSKMEASFQADKKNLVVEHNKTVTKFEDDVAMLTI
QLERLKNKLGQEQKDRENDAQLHSNMLVELQNVLATERLMNDELKSQIAQ
LTSKKEHVKSRTPTPEVPRKDLKPTIKQRQQLDTSNGEIEKIKKDLIEEQ
ERISKAEVLFQLRQTQDEERIRELEQKVSELSDSIGHYEKQRYNDQSTIH
KLKHKLENLEEASSPTAHTTTLSFEAFDDRNGGSGGGVKEKIRLSSSEEY
MRYFDSEKMYSPTADCSNHEMCNCKQELRKLKLELDNYKSKYLQQQKKDN
HTVNSQVAEEYQSQITALKQEKKLLIRNYQEKEKNYLDAVHKLEKGRISA
DEKYKSEACEVQKAHSKQVGDLQMELQKQRIRSMNLLSEKDMEIEKLHKN
IYDGLPGSSSSTAAILPTVHHHHYNTENALSEEFEDFLITPPTKKEEGSL
FHFMEQNSFERDLSKLRHQVIDLEETSRESEQREARLLQQMEVLKEEIRK
QERSKSRESANLEYLKNICLRYMLTKSISQRKQMSITLSTILKFSPNEMK
DVEKRHAAGWW

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_013302	XLOC_013302	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00023687	TCONS_00023687	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000237	GRIP_dom

Vocabulary: **Biological Process**
Term	Definition
GO:0000042	protein targeting to Golgi

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000042	protein targeting to Golgi
molecular_function	GO:0005515	protein binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 177..211
None	No IPR available	COILS	Coil	Coil	coord: 232..259
None	No IPR available	COILS	Coil	Coil	coord: 264..291
None	No IPR available	COILS	Coil	Coil	coord: 556..611
None	No IPR available	COILS	Coil	Coil	coord: 408..435
None	No IPR available	COILS	Coil	Coil	coord: 138..172
None	No IPR available	COILS	Coil	Coil	coord: 378..398
None	No IPR available	COILS	Coil	Coil	coord: 9..64
None	No IPR available	GENE3D	1.20.1170.10		coord: 131..326 e-value: 6.4E-4 score: 18.2 coord: 3..130 e-value: 0.0072 score: 14.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 55..100
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 201..220
IPR000237	GRIP domain	SMART	SM00755	1grip	coord: 608..655 e-value: 1.5E-8 score: 44.4
IPR000237	GRIP domain	GENE3D	1.10.220.60		coord: 608..661 e-value: 4.6E-14 score: 51.6
IPR000237	GRIP domain	PFAM	PF01465	GRIP	coord: 610..651 e-value: 1.6E-11 score: 43.8
IPR000237	GRIP domain	PROSITE	PS50913	GRIP	coord: 605..655 score: 12.458

Blast

[Close]

BLAST of TCONS_00023687-protein vs. Swiss-Prot (Human)
Match: GCC1 (GRIP and coiled-coil domain-containing protein 1 OS=Homo sapiens GN=GCC1 PE=1 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.165e-34
Identity = 209/788 (26.52%), Postives = 353/788 (44.80%), Query Frame = 0

Query:    8 SREEIIHFCERLQKKLKKYEKKLSDLVSAYKDLAEEKKLLEDSLKAVKQERRD-------------------------KDDKTFLQKSKD-----------FITKSKQPVVPPQPPENNDAE---------------SGESAEKKLN-------VVTKAFQTLTEKKSKMEASFQADKKNLVVEHNKTVTKFEDDVAMLTIQLERL-------KNKLGQEQKDRENDAQLHSNMLVELQNVLATERLMNDELKS------------------------QIAQLTSKKEHVKSRTPTPEVPRKDLKPTIKQRQQLDTSNGEIEKIK----KDLIEEQERISKAEVLFQLRQTQ--DEERIRELEQKVSELSDSIGHYEKQRYNDQSTIHKLKHKLE--NLEEASSPTAHTTTLSFEAFDDRNGGSGGGVKEKI----RL--SSSEEYMRYFDSEKM----YSPTADCSNHEMCNC---KQELRKLKLELDNYKSKYLQQQKKDNHTVNSQVAEEY---QSQITALKQEKKLLIRNYQEKEKNYLDAVHKLEKGRISADEKYKSEACEVQKAHSKQVGDLQM-----------ELQKQRIRSMNLLSEKDMEIEKLHK-NIYDGLPGSSSSTAAILPTVHHHHYNTENALSEEFEDFLITPPTKKEEGSLFHFMEQNSF-ERDLSKLRHQVIDLEETSRESEQREARLLQQMEVLKEE-------IRKQERSKSRESANLEYLKNICLRYMLTKSISQRKQMSITLSTILKFSPNEMKDVEK-RHAAGWW 661
            S+++++   E  +K+L +Y+ +L D+V AYK L +EK+ LE S+K +                                +D T    S D           F  +  +P   P PP++ +A                +G   +K+L+        +T +  T+T++KS+MEAS+ ADKK +  +      K E++ A L  +L+ L       K +L  +Q DR  +   H+ ML ELQ +L  ER    +L+                         Q  QLT + E +KS        +    P +++ Q+      E  ++K      L +E  + + AE   QLRQ    +E+R+  LE ++SE+S+ +G YEK +  DQ  I KLK ++   +LE  +   A ++    ++  + +      +K+K+    RL   ++ +     D EK+      P+++ ++ E       +QEL++LK E + YK +  Q   K  +T +  + +E    Q Q+  LK EK + +R   E+    L+  H+ E     AD+ +K E   +Q+ H +++   Q+           EL KQR R++ +L+EKD+E+E+L    +  GLPG  S              ++ ++L++  +      PT       F + EQ +  E +++ LR Q   LE    E  Q + RLL++ E  +EE       I K  R +SRE ANLEYLKNI  R++       R+Q    + TIL FSP E + + +   +A WW
Sbjct:   13 SKKDLLETIETQKKQLLQYQARLKDVVRAYKSLLKEKEALEASIKVLSVSHEADVGLAGVQLPGLTFPDSVDDRCSTHSEDSTGTATSLDTAASLTSTKGEFGVEDDRPARGPPPPKSEEASWSESGVSSSSGDGPFAGGEVDKRLHQLKTQLATLTSSLATVTQEKSRMEASYLADKKKMKQDLEDASNKAEEERARLEGELKGLQEQIAETKARLITQQHDRAQEQSDHALMLRELQKLLQEERTQRQDLELRLEETREALAGRAYAAEQMEGFELQTKQLTREVEELKSELQAIRDEKNQPDPRLQELQE------EAARLKSHFQAQLQQEMRKTALAE--DQLRQQSQVEEQRVAALENQISEVSELLGTYEKAKQKDQLAIQKLKERILQLDLENKTLALAASSRSPLDSHGEESSLDVNVLKDKMEKLKRLLQVAARKSQVTLDVEKLCDLEIMPSSEAADGEKATALYYQQELKQLKEEFERYKMRA-QVVLKSKNTKDGNLGKELEAAQEQLAELK-EKYISLRLSCEE----LEHQHQQE-----ADD-WKQELARLQQLHRQELERCQLDFRDRTLKLEEELHKQRDRALAVLTEKDLELEQLRSVALASGLPGRRSPVGGG-GPGDPADTSSSDSLTQALQLAAANEPT------FFLYAEQLARKEVEITSLRKQKHRLE---VEVHQLQDRLLEEGERHREEVAALQSHIEKNIRDQSREGANLEYLKNIIYRFLTLPDSLGRQQTLTAILTILHFSPEEKQVIMRLPTSASWW 770

The following BLAST results are available for this feature:

BLAST of TCONS_00023687-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00023687-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
GCC1	1.165e-34	26.52	GRIP and coiled-coil domain-containing protein 1 O...	[more]

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TCONS_00023687-protein (polypeptide) - C. hemisphaerica