TCONS_00023261-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00023261-protein
Unique NameTCONS_00023261-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length238

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00023261-protein ID=TCONS_00023261-protein|Name=TCONS_00023261-protein|organism=Clytia hemisphaerica|type=polypeptide|length=238bp
MNKLICIPVLLTMMFVVVSTANNQECKDGRDGRDGKDGRDGKDGVCLYKK
GVFGIKGEKGEDGKDGINGKNGTNGKDGINGKDGKDGRDGKDGKDGLTKN
WKECAWNKIDDHKDNGVIKSCAFKRESPSTYLKVVVSSNMRIYNCNACCK
RWFVTFDGHECAPVPIDGVVFMREGTGNRIKDLHRPRVITGHCKVSKKRQ
VNVALNIGNCANTPGGDAHTGWNSATRIYIEEVDQPQS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_013079XLOC_013079Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00023261TCONS_00023261Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR008160Collagen
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008160Collagen triple helix repeatPFAMPF01391Collagencoord: 51..96
e-value: 3.7E-8
score: 32.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 63..94

Blast
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BLAST of TCONS_00023261-protein vs. Swiss-Prot (Human)
Match: CTHR1 (Collagen triple helix repeat-containing protein 1 OS=Homo sapiens GN=CTHRC1 PE=1 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 7.935e-42
Identity = 72/199 (36.18%), Postives = 121/199 (60.80%), Query Frame = 0 
Query:   40 DGKDGVCLYKKGVFGIKGEKGEDGKDGINGKNGTNGKDGINGKDGKDGRDGKDGKDGLTKNWKECAWNKIDDHKDNGVIKSCAFKRESPSTYLKVVVSSNMRIYNCNACCKRWFVTFDGHECA-PVPIDGVVFMREGTG--NRIKDLHRPRVITGHCKVSKKRQVNVALNIGNCANTPGGDAHTGWNSATRIYIEEVDQ 235
            D  +G+CL  +G  G+ G  G  G +GI G  G  G+DG  G+ G+  R+  +  +  T N+K+C+W+ ++   D G I  C F +   ++ L+V+ S ++R+   NACC+RW+ TF+G EC+ P+PI+ ++++ +G+   N   ++HR   + G C+      V+VA+ +G C++ P GDA TGWNS +RI IEE+ +
Sbjct:   49 DLYNGMCL--QGPAGVPGRDGSPGANGIPGTPGIPGRDGFKGEKGECLRESFE--ESWTPNYKQCSWSSLNYGIDLGKIAECTFTKMRSNSALRVLFSGSLRLKCRNACCQRWYFTFNGAECSGPLPIEAIIYLDQGSPEMNSTINIHRTSSVEGLCEGIGAGLVDVAIWVGTCSDYPKGDASTGWNSVSRIIIEELPK 243
The following BLAST results are available for this feature:
BLAST of TCONS_00023261-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CTHR17.935e-4236.18Collagen triple helix repeat-containing protein 1 ... [more]
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