TCONS_00023253-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00023253-protein
Unique NameTCONS_00023253-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length217

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00023253-protein ID=TCONS_00023253-protein|Name=TCONS_00023253-protein|organism=Clytia hemisphaerica|type=polypeptide|length=217bp
MNKLLCIPVLLTMMFVFVSTANNQECKDGRDGRDGKDGKDGRDGKDGVCL
YRKGIFVIKGEKGKDGRDGKDGKDGVTKNWKECAWNKINEYKDSGVIKSC
DFKKESRSTHLKVFVSSVMRIHNCNKCCKRWFVTFDGQECAPVPIDGIVY
MHAGAGNRMKNLHRTRVIAGHCKVSKKNQINVALNVGDCTGYPGGDASTG
WNSATRIYIEEVDQPQS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_013077XLOC_013077Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00023253TCONS_00023253Clytia hemisphaericatranscript
Blast
[Close]
BLAST of TCONS_00023253-protein vs. Swiss-Prot (Human)
Match: CTHR1 (Collagen triple helix repeat-containing protein 1 OS=Homo sapiens GN=CTHRC1 PE=1 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 1.343e-41
Identity = 76/189 (40.21%), Postives = 111/189 (58.73%), Query Frame = 0 
Query:   29 GRDGRDGKDGKDGRDGKDGVCLYRKGIFVIKGEKGKDGRDGKDGKDGVTKNWKECAWNKINEYKDSGVIKSCDFKKESRSTHLKVFVSSVMRIHNCNKCCKRWFVTFDGQECA-PVPIDGIVYMHAGAG--NRMKNLHRTRVIAGHCKVSKKNQINVALNVGDCTGYPGGDASTGWNSATRIYIEEVDQ 214
            G  GRDG  G +G  G  G+     G    KGEKG+  R+  +  +  T N+K+C+W+ +N   D G I  C F K   ++ L+V  S  +R+   N CC+RW+ TF+G EC+ P+PI+ I+Y+  G+   N   N+HRT  + G C+      ++VA+ VG C+ YP GDASTGWNS +RI IEE+ +
Sbjct:   61 GVPGRDGSPGANGIPGTPGI----PGRDGFKGEKGECLRESFE--ESWTPNYKQCSWSSLNYGIDLGKIAECTFTKMRSNSALRVLFSGSLRLKCRNACCQRWYFTFNGAECSGPLPIEAIIYLDQGSPEMNSTINIHRTSSVEGLCEGIGAGLVDVAIWVGTCSDYPKGDASTGWNSVSRIIIEELPK 243
The following BLAST results are available for this feature:
BLAST of TCONS_00023253-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CTHR11.343e-4140.21Collagen triple helix repeat-containing protein 1 ... [more]
back to top