TCONS_00023084-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00023084-protein
Unique NameTCONS_00023084-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1057

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00023084-protein ID=TCONS_00023084-protein|Name=TCONS_00023084-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1057bp
MAGPNQNAILTELSSIFPQHSQQIITFIHNDVVNVYGQMADKTMILPSCI
ERLLELPDDFNVPTQEGITIEQDMGVEAEIVEEMVGNDDRAILINSTINS
TMNSTSTRIADVTGNSLTTTSSSNLSTNNTASTPSSSNHTTTSDDIDLDS
MDTPLSSTSSENDNSFYRNKDIPRYREPVTISSGENSPVVAKDPNYFPAD
DIDEVLLLEDLSTDVSQVRPKILDDDDDVLEVSITVNRAKRKNENHESTP
DAKKRKSSSDTSSTHNSSVNLSHVGGTIRTHVIVPNRLQDGAGPSNTTST
PNTARAGPDFTAGIFKQIEENRNNLFKNIIGASTITRPPTATIGSSTFTR
PPKQQPTPKAPTPIKVPETPPPPPPPVPAPAPPVLVDIANLKKGMKDFDH
YAKKRVKDIINDVAVTHIERLIQQHPDQTPLEQVVTHIITQLLEDRNYPK
EQKISKHVTSSVSSMPASSSTIKSDPLFYSKQAIYELQKDFPKLKTKVLR
IMFAKHKGLYTPTYKDISAILEEIKAKKKKIEDTVLEGFLKGRRSMSYSY
GMQDLDPLLAKEIAEMKSEQKRSAEAADHEAAVAINNQQYEEDGQAIECG
CCFMESSFDDMVQCSEGHLFCSECLRSYSKEAAFGGGKCNLVCMTSECGA
RFMLSQLQKALPAELLTKFQELEQNEALKLANIENLFTCPHCDFAAEVPG
DGDKVFSCQNPTCLKETCMHCKEPWDDEHFGVPCKEMEKKDVTNLRKTYE
EKMTEAKIRKCWQCKNSFLKESGCNKITCKCGAKMCYICRKPKIDYSHFC
QHARDPGKPCTVCKQCSLWTDPKEDDDRAVKEIQKQAEEEKRKLEGDSAT
DNHIGPKIDVPAAPKVRVNHNRHDHRHGHGGHRQRHRHDHHRHHHHRHAQ
NIGDDHELQRIRNDIDALDEFLLEQPNAVQNNNNFFNMNQQPAIPRNQGN
QALPYMNNYHNNNNLRLIGNHQPNVLPLQRPLPLPNFNVVPPAQQYNYQP
NNLMNQNLPPAVALQPLPGLQPLPGLQPRNHLYPVQQQQGGVQQNYNAFH
DELVNWF
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_012970XLOC_012970Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00023084TCONS_00023084Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002867IBR_dom
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 739..759
NoneNo IPR availableCOILSCoilCoilcoord: 823..850
NoneNo IPR availableCOILSCoilCoilcoord: 514..534
NoneNo IPR availableGENE3D2.20.25.20coord: 686..738
e-value: 4.3E-4
score: 20.1
coord: 760..803
e-value: 0.0075
score: 16.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 873..902
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 836..859
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 240..308
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 337..378
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 118..171
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 749..802
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 679..740
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 594..676
IPR002867IBR domainSMARTSM00647ibrneu5coord: 667..734
e-value: 1.4E-5
score: 34.6

Blast
[Close]
BLAST of TCONS_00023084-protein vs. Swiss-Prot (Human)
Match: RN216 (E3 ubiquitin-protein ligase RNF216 OS=Homo sapiens GN=RNF216 PE=1 SV=3)

HSP 1 Score: 288.115 bits (736), Expect = 5.916e-83
Identity = 180/463 (38.88%), Postives = 255/463 (55.08%), Query Frame = 0 
Query:  442 LLEDRNYPK-EQKISKHVTSSVSSMPASSSTIKSDPLFYSK----------QAIYELQKDFPKLKTKVLRIMFAKHKGLYTPTYKDISAILE-------EIKAKKKK---------IEDTVLEG---------FLKGRRSMSYSYGMQDLDPLLAKEIAEMKSEQKRSAEAADHEAAVAINNQQYEEDGQAIECGCCFMESSFDDMVQCSEGHLFCSECLRSYSKEAAFGGGKCNLVCMTSECGARFMLSQLQKALPAELLTKFQELEQNEALKLANIENLFTCPHCDFAAEVPGDGDKVFSCQNPTCLKETCMHCKEPWDDEHFGVPCKEMEKKDVTNLRKTYEEKMTEAKIRKCWQCKNSFLKESGCNKITCKCGAKMCYICRKPKIDYSHFCQHARDPGKPCTVCKQCSLWTDPKEDDDRAVKEIQKQAEEEKRKLEGDSATDNHIGPKIDVPAAPKVRV 868
            LLE+ +YPK E +I  + +SS+ +    +   K D   YSK          QA   L  DF  L ++ ++    + KG Y  T K +S  ++       E   K+KK         I+    +G         FL+ +R    SY  + L P + +E    + + K  AE  D   A+ +N +QY++DGQ IEC CC+ E  F+++ QC++ HLFC ECL  Y++EA FG GK  L CM   C   F  S+L+K LP  +L K+ E +  E +  A  + L  CP C F A +  D  K FSC NP C KETC  C+  W  EH G+ C+E+ +KD    R + EEKMT A+IRKC +C    +K  GCN+++C+CGA+MCY+CR     Y HFCQH R PG PC  C +CSLWTDP EDD++ ++EIQK+AEEE+++  G++ T   IGP ++ P     RV
Sbjct:  322 LLENPDYPKREDRIIINPSSSLLASQDETKLPKIDFFDYSKLTPLDQRCFIQAADLLMADFKVLSSQDIKWALHELKGHYAITRKALSDAIKKWQELSPETSGKRKKRKQMNQYSYIDFKFEQGDIKIEKRMFFLENKRRHCRSYDRRALLPAVQQEQEFYEQKIKEMAEHEDFLLALQMNEEQYQKDGQLIECRCCYGEFPFEELTQCADAHLFCKECLIRYAQEAVFGSGKLELSCMEGSCTCSFPTSELEKVLPQTILYKYYERKAEEEVAAAYADELVRCPSCSFPALLDSDV-KRFSCPNPHCRKETCRKCQGLWK-EHNGLTCEELAEKDDIKYRTSIEEKMTAARIRKCHKCGTGLIKSEGCNRMSCRCGAQMCYLCRVSINGYDHFCQHPRSPGAPCQECSRCSLWTDPTEDDEKLIEEIQKEAEEEQKRKNGEN-TFKRIGPPLEKPVEKVQRV 781
The following BLAST results are available for this feature:
BLAST of TCONS_00023084-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RN2165.916e-8338.88E3 ubiquitin-protein ligase RNF216 OS=Homo sapiens... [more]
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