TCONS_00023003-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00023003-protein
Unique NameTCONS_00023003-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length484

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00023003-protein ID=TCONS_00023003-protein|Name=TCONS_00023003-protein|organism=Clytia hemisphaerica|type=polypeptide|length=484bp
PLGQTDRVEHKIITEHEIPIRQKPYRLSPAQKETLEKELGSQLEKKIIQK
SSSLWSSPIVMIPKSDGGTRVCIDYRKLNKIKKKDAHPLPKIEEILDHLN
GAKIFSTLDLLTGYHQIPMEKASIPKTAFVTHKGLFEYLRMPMGLCNAAA
SFERLAEQVFALELWVFLLLYIDDVIIYSKSPSDHLKQLRVVLSRLRGNK
LQAKLSKCRFAMSQLSFLGHTVNEKGILPLNSNTAAIKSFEYPKSQKDLR
TFLGMCSYYRKFIPNFGKIAQSLYTLLKKEQKFFLTDEMKADFDTLKAKL
SSPPLLHYPDYDKTFFVITDASKYAIGHIIAQEISGKFVPIRYGGRTLKP
PEINYAISEKEALSLVHAIQKNHHYLYGRFFWVFTDHLPLRNMVDAHDPT
GRLSRWHLTLQQYDYTVKYLPGNQNVVADALSRLNTISPEIDENEIPRKN
LIDHERPQPVSCVILPDPAIIGEQDKDPDYLFHG
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_012928XLOC_012928Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00023003TCONS_00023003Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.10.10.10coord: 8..135
e-value: 1.1E-36
score: 125.0
NoneNo IPR availableGENE3D3.30.70.270coord: 136..229
e-value: 1.4E-23
score: 82.4
NoneNo IPR availableGENE3D3.30.70.270coord: 230..353
e-value: 2.2E-38
score: 130.5
NoneNo IPR availableCDDcd09274RNase_HI_RT_Ty3coord: 316..434
e-value: 1.28019E-47
score: 160.736
NoneNo IPR availableCDDcd01647RT_LTRcoord: 46..222
e-value: 3.9474E-78
score: 243.271
NoneNo IPR availableSUPERFAMILY56672DNA/RNA polymerasescoord: 2..419
IPR000477Reverse transcriptase domainPFAMPF00078RVT_1coord: 62..222
e-value: 4.1E-24
score: 85.2
IPR000477Reverse transcriptase domainPROSITEPS50878RT_POLcoord: 43..222
score: 16.296

Blast
[Close]
BLAST of TCONS_00023003-protein vs. Swiss-Prot (Human)
Match: RTL1 (Retrotransposon-like protein 1 OS=Homo sapiens GN=RTL1 PE=3 SV=3)

HSP 1 Score: 98.9821 bits (245), Expect = 9.931e-22
Identity = 85/299 (28.43%), Postives = 132/299 (44.15%), Query Frame = 0 
Query:   92 IEEILDHLNGAKIFSTLDL--------LTGYHQIPMEKASIPKTAFVTHKGL-FEYLR--MPMGLCNAAASFERLAEQVFALELWVFLLLYIDDVIIYSKSPSDHLKQLRVVLSRLRGNKLQAKLSKCRFAMSQLSFLGHTVNEKGILPLNSNTAA-IKSFEYPKSQKDLRTFLGMCSYYRKFIPNFGKIAQSLYTLLKKEQKFFLTDEMKADFDTLKAKLSSPPLLHYPDYDKTFFVITDASKYAIGHIIAQ--EISGKFVPIRYGGRTLKPPEINYAISEKEALSLVHAIQKNHHYL 376
            I E+ D L+GA+ F+ L+L        + G+         + K AF    GL  E ++   P  L       + +   +    L  F+L Y  +V+IYS S  +HL  +R VL R R + +   L K +F    + FLG  V  KG+  LN N    I  +  P S+  LR F+     YR F+  F  IA+ L   L    +F+   E +  F+ LK      PLLH+P     F++ T  +  A+   + Q  + +GK     +  R + P E+ Y+ +E + L +  A      YL
Sbjct:  650 IPELFDQLHGAEWFTKLELRGTIVEESVNGHR-----TEDVWKAAF----GLELEEMKSYQPFALSPDPIIPQNVIHFILKDMLGFFVLSYGQEVLIYSMSQEEHLHHVRQVLVRFRHHNVYCSLDKSQFHRQTVEFLGFVVTPKGV-KLNKNVMTIITGYPTPGSKLSLRNFIEFVFPYRHFVERFSIIAEPLVRQLLSSYQFYWGVEEQEAFECLKRAFRKAPLLHHPKPQNPFYLETGVTGTALHASLIQIDDQTGKRACCAFYSRNISPIEVEYSQAEMKILPIRAAFMVWCRYL 938
The following BLAST results are available for this feature:
BLAST of TCONS_00023003-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RTL19.931e-2228.43Retrotransposon-like protein 1 OS=Homo sapiens GN=... [more]
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