TCONS_00022986-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00022986-protein
Unique Name	TCONS_00022986-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1100

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00022986-protein ID=TCONS_00022986-protein|Name=TCONS_00022986-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1100bp
MATAGPISAMHRFCRLPTPSYEKIYADANNILDDIISQCHAYRRPNQQDI
SLEEMVSFLSHGCKTLQNASILLKSKFAQVVNIYLPLMKSTIDENCVNQL
VTFLCQSLTSVKSSLVSEFMKALALTLTGTGALLNEDSIIQLLGEEGVIW
MYLAQSDWILSSYSIQCLGNICLRSQRVGVMAKENIQLCYSKLLDKLRMF
VFEDTNELEHYKLINVTLKAIQKILSGITMHDNIIEPEFAVLLLKIFLIY
GLPGYQSIVNRLKLGLPSRKSDDLDTMEKIYPTKKKEKSAMTKKVNAKKG
RKKKKRNLNNSIQEAYDSVNEAESSGYGFVNNWRQIQSPSSSESEFSDSE
SSQSEQLNSITSKIRYNCALTLQEILRCCDRRSRFACWLAVIPDTLTPDE
PSLLYSFLKETTTKMQSTLLLTIMELIDGSRGFLDSVITQQNIASSVMKA
DRPFTPYSVRIVNSLHLLHDEIISFIESCKSELLKEKVIKCLTLLMLNTP
YKKLQKDYLSNILRLVIPSLHSTEATLCQSVITCIAASISIQPDNMHVYQ
IISSAELPKDIKSTTKKKENALATPKTQEAGEAWLIKHCLQILSLASKDG
VFELRLVSEYIQLLTVLLRCHPQLMSDEHIDKLIHFCTNVFMFSTDVSIS
FHAIKLLEELSKHYNSNDQRALNPEKGLHFWRKMISGAIPQYLNSEPIKP
VKGQAAVCDWLSNIGSHIFEKLKTPEQIFVKTVLIGMTENEEPLISAAAV
RAIGVTIDYDSIIDDVWFVVDATRSILKQLNNASLSVRLKAAWSLANLCD
FIAKHGFLANEYPETLILDLLRDSTKAACGNEKVSPNGVRAIGNLLKAFD
ERLFGKAKFEEGVKESICAIIKNIKTGQMKTRWNACYACRYIFENVDCPI
GTADWTDELFTALLQALGECKNFKVRISAAIALSSLNERSKYGNKLTFNK
VWMETLKALEKSEELTDFTEFKHKENLQEQTTVLLLHLISMATSEDVQLM
QEMTKEHQDILLVNCRKCLTRIEVCQQLDEPTTTAPLAGASADAYVGYPV
KNEISEEEKQKLLLIKKHMENAKINLCNAKNIDKQKTFIDVLTTAICLKR

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_012913	XLOC_012913	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00022986	TCONS_00022986	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR011989	ARM-like
IPR025283	DUF4042
IPR016024	ARM-type_fold

Vocabulary: **Molecular Function**
Term	Definition
GO:0005488	binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005488	binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 305..325
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 276..307
IPR011989	Armadillo-like helical	GENE3D	1.25.10.10		coord: 28..582 e-value: 1.4E-13 score: 49.5
IPR011989	Armadillo-like helical	GENE3D	1.25.10.10		coord: 583..1030 e-value: 5.7E-24 score: 84.0
IPR025283	Domain of unknown function DUF4042	PFAM	PF13251	DUF4042	coord: 363..541 e-value: 5.3E-24 score: 84.8
IPR016024	Armadillo-type fold	SUPERFAMILY	48371	ARM repeat	coord: 357..427 coord: 578..1001 coord: 474..544
IPR016024	Armadillo-type fold	SUPERFAMILY	48371	ARM repeat	coord: 13..249 coord: 345..553

Blast

[Close]

BLAST of TCONS_00022986-protein vs. Swiss-Prot (Human)
Match: HEAT6 (HEAT repeat-containing protein 6 OS=Homo sapiens GN=HEATR6 PE=1 SV=1)

HSP 1 Score: 353.984 bits (907), Expect = 4.197e-104
Identity = 301/1084 (27.77%), Postives = 504/1084 (46.49%), Query Frame = 0

Query:   12 RFCRLPTPSYEKIYADANNILDDIISQCHAYRRPNQQDISLEEMVSFLSHGCKTLQNASILLKSKFAQVVNIYLPLMKSTIDENCVNQLVTFLCQSLTSVKSSLVSEFMKALALTLTGTGALLNEDSIIQLLGEEGVIWMY--LAQSDWILSSYSIQCLGNICLRSQRVGVMAKENIQLCYSKLLDKLRMFVFEDTNELEHYKLINVTLKAIQKILSGITMHDNIIEPEFAVL-LLKIFLIYGLPGYQSIVNRLKLGLPSRKSDDLDTMEKIYPTKKKEKSAM--------------------------------------TKKVNAKKGRKKKKRNLNNSIQE-AYDSVNEAESSGYGFVNNWRQIQSPSSSESEFSDSESSQSEQLNSITSKIRYNCALTLQEILRCCDRRSRFACWLAVIPDTL---TPDEPSLLYSFLKETTTKMQSTLLLTIMELIDGSRGFLDSVITQQNIASSVMKADRPFTPYSVRIVNSLHLLHDEIISFIESCKSELLKEKVIKCLTLLMLNTPYKKLQKDYLSNILRLVIPSLHSTEATLCQSVITCIAASISIQ---PDNMHVYQIISSAEL-----------PKD----IKSTTKKKENALATPKTQEAGEAWLIKHCLQILSLASKD------------GVFE---LRLVSEYIQLLTVLLRCHPQLMSDEHIDKLIHFCTNVFMFSTDVSISFHAIKLLEELS----KHYNSNDQRALNPEKGLH----FWRKMISGAIPQYL-NSEPIKPVKGQAAVCDWLSNIGSHIFEKLKTPEQIFVKTVLIGMTENEEPLISAAAVRAIGVTIDYDSIIDDVWFVVDATRSILKQLNNASLSVRLKAAWSLANLCDFI-----AKHGFLANEYPETLILDLLRDSTKAACGNEKVSPNGVRAIGNLLKAFDERLFGKAKFEEGVKESICAIIKNIKT-GQMKTRWNACYACRYIFENVDCPIGTADWTDELFTALLQALGECKNFKVRISAAIALSSLNERSKYGNKLTFNKVWMETLKALEKSEELTDFTEFKHKENLQEQTTVLLLHLISMATSEDVQLMQE 1002
            R C L          + + + D +IS+ ++        ++ E++ + L   C+ +      L SK +Q+++  L  ++  +DE  ++ L+ +   ++    S    E ++ALA  +   G+   +  + +LLG  G++     LAQSD  +   ++ C+ N+CL       + +    +C+   L  L+     D +++    L+   LK IQ +L+G  M     +   A+L +LK F+ +GLPG    +  +    P  + D    ++     ++ E SA                                       T +VN  +G      +L   +Q    D    AE  G     +    +  SSSES+FSD+E     ++ S  +K+R    +     ++  +++  +  W A IPDT    +P   SL+   LK+ + K ++  L  +  +++GS+ FL       ++A       R FTP+SV I  S+  LH  ++  + +  S     ++IKCL  L+ N PY +L+   L+ +   + P +   +  +  S +T + A +S     P+   + Q   S+ L           P D      +    +E ++++PK   +   WLI+ C+ I+ L  +D              +E   +RL  E +Q+LT+L R +   M+  ++ +L        M   D SI  H  KLLEEL     + Y  +   A +    +     FW  M++G +P+ L NSE   P   QA+ CD LS+I    F  L    Q+   TVL+G+ +++  L+ AA  RA+GV + +  +  DV FV DA  +IL  L + SL+VR KAAWSL NL D +             E+   L+L +LR + +A+   +KV  N VRA+GNLL         K  F E ++ESI A+I  + T   MK RWNACYA   +F+N   P+GTA WT + + AL   +  CKNFKVRI +A ALS   +R +YG+   + ++W   + AL+KSE+  DF EFK+  +L+ Q    L+HL+S+A++ D+  M+E
Sbjct:   36 RLCALRPDDSSSARTEIHLLFDQLISENYS----EGSGVAPEDVSALLVQACRLVPLNQNHLVSKVSQLIHHLLNRLQVIVDEQHLDFLLAYTISAIHQCSSWTHREILQALAALVYCNGSKC-QKYLPELLGNTGLLMKLSDLAQSDPEVRRAAVHCMANLCLSVPGQPYLEEPYQNVCFQAFLTILQSPKSSDMDDITFCMLLQNALKGIQSLLNGGRMKLTQTDELGALLAVLKKFMFHGLPGLNIEMPTVLYPTPLPQYDGRTPIKP----QQSESSASRPTLNKKKKSKVKPKKIQQGEEEEKESSGEIEAAPVTGTGRVNLHEGNTWCPSSLG--VQSLPLDGSGAAEKDGVSSSFSSSSWKRVSSSESDFSDAEGGMQSKMRSYQAKVRQGALVCFLSTIKSIEKKVLYGYWSAFIPDTPELGSPQSVSLMTLTLKDPSPKTRACALQVLSAILEGSKQFL-------SVAEDTSDHRRAFTPFSVMIACSIRELHRCLLLALVAESSSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPYIRHKDVNVRVSSLTLLGAIVSTHAPLPEVQLLLQQPCSSGLGNSNSATPHLSPPDWWKKAPAGPSLEETSVSSPKG-SSEPCWLIRLCISIVVLPKEDSCSGSDAGSAAGSTYEPSPMRL--EALQVLTLLARGYFS-MTQAYLMELGEVICKC-MGEADPSIQLHGAKLLEELGTGLIQQYKPDSTAAPDQRAPVFLVVMFWTMMLNGPLPRALQNSE--HPTL-QASACDALSSILPEAFSNLPNDRQMLCITVLLGLNDSKNRLVKAATSRALGVYVLFPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNLTDTLIVNMETPDPSFQEEFSGLLLLKMLRSAIEASKDKDKVKSNAVRALGNLLHFLQPSHIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNVFKNPALPLGTAPWTSQAYNALTSVVTSCKNFKVRIRSAAALSVPGKREQYGSVDQYARIWNALVTALQKSEDTIDFLEFKYCVSLRTQICQALIHLLSLASASDLPCMKE 1093

The following BLAST results are available for this feature:

BLAST of TCONS_00022986-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00022986-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
HEAT6	4.197e-104	27.77	HEAT repeat-containing protein 6 OS=Homo sapiens G...	[more]

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TCONS_00022986-protein (polypeptide) - C. hemisphaerica