|
|
Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00022930-protein ID=TCONS_00022930-protein|Name=TCONS_00022930-protein|organism=Clytia hemisphaerica|type=polypeptide|length=2760bp
FQHILRDKRVIDYAQDIADSVPLPETKVTEATKMTRSKAKLFGQQPLLTA
LETTKPKSILDLEFSDSSSDDEDFQPGHDTEASQTSDDDMTDRLSDITAD
ARSPRVLTTPKPELNNSLQVIDEGQIMVGAVSTPKSKDDLIASRTRSRCP
MEDVTVEDLEALFNPPDFEPTSFVPEDLDADELIWQGWLVGLTKPEKSVL
NDTNDDDKDDEDFNYMEATAEEEIEIEEELRDDRATRITQKELQGLFNEL
LLGYDQDAMDNYDELIQELCEEQPQSQSDRFEVPCDSMEAADGLVLTYQM
RQQMTAQLQQHVQMLSQVYMLSCTHSWLRNETHQCKQYIEELATFHDKAV
QNSQDYLGSLSPELSMFCTPGISDSFNIIKSLAGQKIVTRNPKSQMQKAK
KNVTISDTIAEMFTTIPFFATYIELVPKQGPQNEEMQRRTRRKKFLQCED
NLLALGLDQFKGKRYERFEAIKEHLLPIFDPKQLQIRVKNCTSTLKLKYN
PIAYVKNEKRVPELENEVNITVPRNISEIPLYKLPKMVWKHRFIPNWFLK
VDRELGKNEKIILEQKHLKEYEKKNKLFEIAQQHSTPSNKAVLSTPLQLV
STQHNIERLYNSAPIFPTYQVKSGINNATMTTSDKTNMTSQQESGQDSTI
KNRVNRSLSYSEVQSSLSFNNNSNLSSTSISKENNTSGDGFPLPVNMLLS
DLPMPDSLPHLTFSPSKPLHETSFSEVKQFLKTPQKLKSLKAEDKKTKDV
SLNLSPLKDLDVSQVCVGKNLETPQKTDIKNNNDGELSSPGTGYSPESSY
GDSPINHKITSEHGQVNSPHAPVANNLITASSPQTKTCDIFQQLPDGRIT
TFGSPSSALLKNLKDNHPSKSHSPLSQIMHSPGLTNLPVNSSGLQSPVVQ
TMNLASPQNAQNVQCQSSQAISPPSTNDVFDLPQVVRSPIVQVHSPQYHS
PMVNSPMANSPQVQLPQLHSMMVQCKSPQVQQPLVHSPQVHSPMVLVNSP
QVHLPQVHSPMAHSPLVNSPKVLQTIPTQIVQGAMIAQSPLATGNFDQQL
QSPATPMSLQSPQIAYQPNIVQQQPQSPVITNSPASPQVLLNYHVAMQSP
LPSPHPHNSLPMHSPAPNHVIANSPNVQSNIIFQQPANQQSASPSVAYQV
QSSASLVTINQHQAEQKTNEPMSMQSPMQYTPLHSPRVYQSPARQTIAHS
PHIGLENNQHIVQLPVPPSQSSCQPASTNQIQQSLTQEQNVNQSNKQQST
LRISPFAGHSSQNTPTIGHDEETSNDHSPIVETPTNSQDAFFGKDTPPFD
RNTPICQSLATPTHESAAYTNGNTENSMTKLMDKQRTVDEKLESLIFMDD
PKKEGRRKKTQIKRKKKPQFDYEQALKQRAVDFAQIYFTRVRETLADQPD
LFEEFFELMKSVNQRRISKLETYQKICVLFVDYPDLVENFVGFLDQHEAR
YVGKYMHWLQFELNIKFLTECEQTFFDAPEQYEKITKKIVEVTSRTKNAQ
QILDEVTPLFQGDVQLRHMFIRLFPDLSPPPCNDEDFEVIDFSAVSSGLK
EIDDFEEIPYQPPDLDQSMNALDDDFNQLNTPYSTRGGRRDSTSLKSPIV
IKKKKRIPTFSPKKRSNKNIAASKLKQLATKRQQIKEQKKRKFRASPTSG
EDDFHDNDEDDDDVIDDEFFERLAPHDDESCFPLKENSKGGHQSDELEDR
QNWPKTPEKQPTDSEHSNLDQKPDRAPLNNEHSNLSNKSTDRNIFETLNK
DQERTPSELSFRTHSLGSDPSNSRPEAKDDGKSITSNININNGDTEGVVE
SESGNDKAKEETYPVSPKSVVDQCIDPLNGTIVVDDSRGEENLENPNDEP
GDTNIDQDKESKVYLDETLKPDPIPLESASVASADVDFNVVTTKQSGPDI
VDLCSVSSSTIDSSTKHLADVKTIEQIVTEAERDEIETDNEVERIMFKIP
KVTFSTPKITQNSSDDDVPSCSKASKDALSQLSVISVVKSDVETNFQEEI
ITKKSEVEDFNELTFPFPNESQTSSKTLHQDKSVLHNDMKEPQNLSKNID
QASAPRSDIPFSFPKILSGEECPEKQNDMEEKPDSKKRNVVTEPDLTNNL
TFPFPAESNHKIPNQNQKIVVDQLHQPSLTNDLTFPHYPEDTKSRPPEGT
KKTDEISCRSDRVQDTGEGKPGDNIEKVVLAKTDAQNSTTVSVNLGKSDM
NNSPSRHVDISKETSTSKSKKLHENIPIKPVYIKKPVRRLSCQDITTLST
EVDPLLFSEDSMTSTLTSYGLNSKSVAKVLKKRKIKKSQSMVIIPQKPPR
RLSSQEITTLCTDIDPILFSEDSTNSTLISYGLKKRRLKKSEIVKLSDIS
SDRDYLSDNEELESRSVQGSFDMNSSLTRSPDEAQPGPSHVRRDSKKLIK
GKTKRYKETKRRLKHTDIKTLSKRENKHAFSDEDDDYFESWSVESSYGPN
QSILSSQSVNSPVYAMNGDTRSIPEADNQRIGEKNVDSKRPLQSDILEIS
PIDCQEKAQQMKNIECGSRSTSTENEVSCAVILSTSGKELMSIKEDDEEQ
NEIHEDARETEKEIRSIVRDQETLDENNKEVTKEFMQPVDENPPSKALIP
AQPMVTHQSNPTNVKPLLQSSEPNEQTTVAENSIKNTDGALQDDTIESSI
GRKSVEESSLAAEKPENLHQDTITAASNEKVEWSREEDTIILFALKNHGN
QLDLHHTIAPQFPKHTLGEVQERVAFYLKMLPPSSHVDESESESDSSTFD
YEGSSSSDSE Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR003822 | PAH |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006355 |
regulation of transcription, DNA-templated |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | COILS | Coil | Coil | coord: 1618..1641 |
| None | No IPR available | COILS | Coil | Coil | coord: 2543..2577 |
| None | No IPR available | GENE3D | 1.20.1160.11 | | coord: 1374..1449
e-value: 3.7E-12
score: 45.5
coord: 1459..1528
e-value: 1.8E-4
score: 20.9 |
| None | No IPR available | GENE3D | 1.10.10.60 | | coord: 2663..2752
e-value: 0.0061
score: 16.0 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 2131..2173 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 2543..2562 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1214..1294 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 2357..2413 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1100..1123 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 2734..2760 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 2606..2665 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 63..91 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 630..653 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1675..1861 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 2048..2113 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 773..800 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 2193..2220 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1560..1663 |
| IPR003822 | Paired amphipathic helix | PROSITE | PS51477 | PAH | coord: 1377..1447
score: 13.238 |
| IPR003822 | Paired amphipathic helix | PROSITE | PS51477 | PAH | coord: 1457..1527
score: 6.417 |
| IPR003822 | Paired amphipathic helix | SUPERFAMILY | 47762 | PAH2 domain | coord: 1461..1526 |
| IPR003822 | Paired amphipathic helix | SUPERFAMILY | 47762 | PAH2 domain | coord: 1378..1446 |
Blast
BLAST of TCONS_00022930-protein vs. Swiss-Prot (Human)
Match: GON4L (GON-4-like protein OS=Homo sapiens GN=GON4L PE=1 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 1.185e-20 Identity = 124/462 (26.84%), Postives = 201/462 (43.51%), Query Frame = 0
Query: 138 DDLIASRTRSRCPMEDVTVEDLEALFNPPDFEPTSFVPEDLDADELIWQGWLVGLTKPEKSVLNDTNDDDKDDEDFNYMEATAEEEIEIEEELRDDRATRITQKELQGLFNELLLGY-DQDAMDNY--DELIQELCEEQPQS-----QSDRFEVPCDSM-----EAADGLVLTYQMRQQMTAQLQQ-------------------------------HVQMLSQVYMLSCTHSWLRNETHQCKQYIEELATFHDKAVQNSQDYLGSLSPEL-SMFCTPGISDSFNIIKSLAGQKIVTRNPKSQMQK-AKKNVTISDTIAEMFTTIPFFATYIELVP-----KQGPQNEEMQRRTRRKKFLQCEDNLLALGLDQFKGKRYERFEAIKEHLLPIFDPKQLQIRVKNCTSTLKLKYNPIAYVKNEKRVPELENEVNITVPRNISEIPLYKLPKMVWKHRFIPNWF 548
D LIA RTRS+ P++DV + LEA PD P + P AD+ W+ WL GL V N+ DD DD ++N++E E + E + R DRA RIT+KE+ L EL + D+ N D +E C +P+ Q+ RFE P ++ L +M++ QLQ+ HVQ+L+Q+++L+ + L E + +++EL TF ++ Y +P+ ++F + + +I+ + + +P ++K A + + +A + T F Y EL+P + PQ++ + F + EDNLLALGL F+G + I ++LL QL +R+KN + N I + K K++P L P +K P +HR +P W
Sbjct: 488 DSLIAFRTRSKMPLKDVPLGQLEAELQAPDITPDMYDPNT--ADDEDWKMWLGGLMN--DDVGNEDEADDDDDPEYNFLEDLDEPDTE---DFRTDRAVRITKKEVNELMEELFETFQDEMGFSNMEDDGPEEEECVAEPRPNFNTPQALRFEEPLANLLNEQHRTVKELFEQLKMKKSSAKQLQEVEKVKPQSEKVHQTLILDPAQRKRLQQQMQQHVQLLTQIHLLATCNPNLNPEATTTRIFLKELGTFAQSSIALHHQY----NPKFQTLFQPCNLMGAMQLIEDFSTHVSIDCSPHKTVKKTANEFPCLPKQVAWILATSKVF-MYPELLPVCSLKAKNPQDKIV--------FTKAEDNLLALGLKHFEGTEFPN-PLISKYLLTCKTAHQLTVRIKNLNMN-RAPDNIIKFYKKTKQLPVLGKCCEEIQPHQ------WKPPIEREEHR-LPFWL 920
The following BLAST results are available for this feature:
|
