TCONS_00022744-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00022744-protein
Unique Name	TCONS_00022744-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	486

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00022744-protein ID=TCONS_00022744-protein|Name=TCONS_00022744-protein|organism=Clytia hemisphaerica|type=polypeptide|length=486bp
MSPCGCYYPRNKIQMALVTDGCASYAIIGYVAVNWGSRDQAKAGYVHVLG
NNRVETPESTAGTLATLVASQADQVWYFQGENVCTGKARDEFVVDPQNNN
QYYVCGDCDIARTITCTSPQFYDPQCQKCVTRAFPNCDNPVNGGFSQWSN
FGTCTKTCGDGQQEQRRTCTNPVPTNGGLSCQNNPAIIDKATSKLIPCNL
RTCPQNGGYCSWTNGACNPTCGAGTLTQTRTCACPAPAFGGSDCSLLGPT
TNIISCTNGPCPINGGFTAWQNIGGCTKTCGDDGLQRQERTCTNPVAQFG
GLTCQENPLIVNKAIVQFIACGRGRCPDVCTNSNTQHNDFYVYPSQTRYC
LCTRIDSNSLLTYIDDNVGCVDCPAGASWDPLIDSCSQIQQFQCLADPFC
VGKTAGDYSIYHGFANESCSTQYYRCDASLQKQLFSCPINDAGAYFNPVT
RTCSTGLAPASCDSKFYYAYKLFEPTPVEVLFFATT

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_012769	XLOC_012769	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00022744	TCONS_00022744	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR002557	Chitin-bd_dom
IPR000884	TSP1_rpt

Vocabulary: **Cellular Component**
Term	Definition
GO:0005576	extracellular region

Vocabulary: **Biological Process**
Term	Definition
GO:0006030	chitin metabolic process

Vocabulary: **Molecular Function**
Term	Definition
GO:0008061	chitin binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006030	chitin metabolic process
cellular_component	GO:0005576	extracellular region
molecular_function	GO:0008061	chitin binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002557	Chitin binding domain	SMART	SM00494	chi_10	coord: 82..139 e-value: 7.5E-4 score: 28.8 coord: 398..464 e-value: 0.61 score: 19.1 coord: 328..396 e-value: 27.0 score: 3.0
IPR002557	Chitin binding domain	GENE3D	2.170.140.10		coord: 75..154 e-value: 0.0073 score: 15.7 coord: 389..468 e-value: 3.0E-4 score: 20.1
IPR002557	Chitin binding domain	PROSITE	PS50940	CHIT_BIND_II	coord: 397..464 score: 8.42
IPR002557	Chitin binding domain	PROSITE	PS50940	CHIT_BIND_II	coord: 81..139 score: 9.664
IPR002557	Chitin binding domain	SUPERFAMILY	57625	Invertebrate chitin-binding proteins	coord: 81..140
IPR000884	Thrombospondin type-1 (TSP1) repeat	SMART	SM00209	TSP1_2	coord: 145..204 e-value: 5.7E-9 score: 45.8 coord: 267..327 e-value: 0.0015 score: 27.8 coord: 206..262 e-value: 0.9 score: 9.7
IPR000884	Thrombospondin type-1 (TSP1) repeat	GENE3D	2.20.100.10		coord: 263..327 e-value: 2.0E-6 score: 27.7
IPR000884	Thrombospondin type-1 (TSP1) repeat	PFAM	PF00090	TSP_1	coord: 269..307 e-value: 0.0011 score: 19.0 coord: 146..184 e-value: 6.5E-5 score: 23.0 coord: 216..261 e-value: 0.15 score: 12.2
IPR000884	Thrombospondin type-1 (TSP1) repeat	GENE3D	2.20.100.10		coord: 155..203 e-value: 5.8E-12 score: 45.2 coord: 205..261 e-value: 1.4E-6 score: 28.0
IPR000884	Thrombospondin type-1 (TSP1) repeat	PROSITE	PS50092	TSP1	coord: 206..262 score: 8.824
IPR000884	Thrombospondin type-1 (TSP1) repeat	PROSITE	PS50092	TSP1	coord: 142..204 score: 10.709
IPR000884	Thrombospondin type-1 (TSP1) repeat	PROSITE	PS50092	TSP1	coord: 264..327 score: 8.682
IPR000884	Thrombospondin type-1 (TSP1) repeat	SUPERFAMILY	82895	TSP-1 type 1 repeat	coord: 141..185
IPR000884	Thrombospondin type-1 (TSP1) repeat	SUPERFAMILY	82895	TSP-1 type 1 repeat	coord: 260..310

Blast

[Close]

BLAST of TCONS_00022744-protein vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2)

HSP 1 Score: 127.872 bits (320), Expect = 4.098e-31
Identity = 70/174 (40.23%), Postives = 98/174 (56.32%), Query Frame = 0

Query:  136 NCDN---PVNGGFSQWSNFGTCTKTCGDGQQEQRRTCTNPVPTNGGLSCQNNPAIIDKATSKLIPCNLRTCPQNGGYCSWTN-GACNPTCGAGTLTQTRTCACPAPAFGGSDCSLLGPTTNIISCTNGPCPINGGFTAWQNIGGCTKTCGDDGLQRQERTCTNPVAQFGGLTCQ 305
            NC N   PV+G +S+WS +  CT++CG G Q + RTC NP   +GG  C+ N         ++I CN+R CP +G + +W   G C+ +CG GT T+ R C  P PAFGGS C   G  T +  C    CPI+G +  W +   C+ +CG    QR  R C++PV Q+GG  C+
Sbjct: 4577 NCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAV-------EIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCD--GAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRT-RGCSDPVPQYGGRKCE 4740

HSP 2 Score: 120.553 bits (301), Expect = 1.028e-28
Identity = 71/188 (37.77%), Postives = 96/188 (51.06%), Query Frame = 0

Query:  141 VNGGFSQWSNFGTCTKTCGDGQQEQRRTCTNPVPTNGGLSCQNNPAIIDKATSKLIPCNLRTCPQNGGYCSWTN-GACNPTCGAGTLTQTRTCACPAPAFGGSDCSLLGPTTNIISCTNGPCPINGGFTAWQNIGGCTKTCGDDGLQRQERTCTNPVAQFGGLTCQENPLIVNKAIVQFIACGRGRCP 327
            V+GGFSQWS +  C+ TCG G Q++ R C  P+P NGG  CQ        +  ++  C  + CP +G +  W+    C  +CG G  T+TRTC  P+   GG  C   G    II C   PCP++G ++AWQ  G C+++CG  G Q + R C NP   FGG  C       + A  Q   C    CP
Sbjct: 4528 VHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQG-------SDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCE--GNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCG-KGTQTRARLCNNPPPAFGGSYC-------DGAETQMQVCNERNCP 4698

HSP 3 Score: 101.293 bits (251), Expect = 2.263e-22
Identity = 60/181 (33.15%), Postives = 95/181 (52.49%), Query Frame = 0

Query:  125 QCQKCVTRAFPNCDNPVNGGFSQWSNFGTCTKTCGDGQQEQRRTCTNPVPTNGGLSCQNNPAIIDKATSKLIPCNLRTCPQNGGYCSWTN-GACNPTCGAGTLTQTRTCACPAPAFGGSDCSLLGPTTNIISCTNGPCPINGGFTAWQNIGGCTKTCGDDGLQRQERTCTNPVAQFGGLTC 304
            Q Q C  R   NC  P++G ++ W+++  C+ +CG G +++ R C++PVP  GG  C+ +    D        CN   CP +G +  W+  G C+ TC  G + + RTC  P P+ GG  C   GP + I  C    CP++G + +W +   C+ +CG  G + ++R C +PV   GG  C
Sbjct: 4688 QMQVCNER---NC--PIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDF-------CNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACG--GPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCG-GGEKTRKRLCDHPVPVKGGRPC 4853

HSP 4 Score: 88.1965 bits (217), Expect = 3.703e-18
Identity = 60/163 (36.81%), Postives = 81/163 (49.69%), Query Frame = 0

Query:  105 CGDCDIARTITCTSP--QFYDPQCQKC-VTRAFPNCDN-PVNGGFSQWSNFGTCTKTCGDGQQEQRRTCTNPVPTNGGLSCQNNPAIIDKATSKLIPCNLRTCPQNGGYCSWTN-GACNPTCGAGTLTQTRTCACPAPAFGGSDCSLLGPTTNIISCTNGPCP 262
            CG     RT  C+ P  Q+   +C+   V   F N D  P +G +S WS +GTC++TC  GQ  + RTC NP P+NGG +C    + I +       CN   CP +G + SW +   C+ +CG G  T+ R C  P P  GG  C   G TT +  C    CP
Sbjct: 4716 CGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQR-------CNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCP--GDTTQVTRCNVQACP 4869

The following BLAST results are available for this feature:

BLAST of TCONS_00022744-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00022744-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
HMCN1	4.098e-31	40.23	Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2	[more]

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TCONS_00022744-protein (polypeptide) - C. hemisphaerica