TCONS_00022626-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00022626-protein
Unique Name	TCONS_00022626-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	340

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00022626-protein ID=TCONS_00022626-protein|Name=TCONS_00022626-protein|organism=Clytia hemisphaerica|type=polypeptide|length=340bp
LSFSSQKIYINKRKTEMAAQQTADEGITKKLEEINLEDKEPCVLVLGMAG
SGKSSFVQRLTSHLHTKKQPPYVINLDPAINEVIYPCNIDIRDTVDYKEV
MKQYNLGPNGGIMTSLNLFSTKFDQVLNYLEQKKDKSSLVLIDTPGQIEA
FTWSASGSIITESLATTFPSVIVYVMDTVRSVSPVTFMSNMLYACSIMYK
TKLPFIVVLSKIDVIDHSFIKEWMEDFEVFQEALDADTSYTSNLARSMSL
VLDEFYSHLNCVGVSSLTGDGMDDFMKALENAVQEFHTEYKQNRSAKKTP
VDEKDSTKNAEPNLIFSSSDVHKLQARDEITISKQSSDMT

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_012705	XLOC_012705	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00022626	TCONS_00022626	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR004130	Gpn
IPR027417	P-loop_NTPase

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.40.50.300		coord: 27..286 e-value: 3.8E-53 score: 179.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 290..320
None	No IPR available	CDD	cd00882	Ras_like_GTPase	coord: 44..279 e-value: 5.28789E-8 score: 49.3772
IPR004130	GPN-loop GTPase	PFAM	PF03029	ATP_bind_1	coord: 45..284 e-value: 2.6E-85 score: 285.9
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 41..284

Blast

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BLAST of TCONS_00022626-protein vs. Swiss-Prot (Human)
Match: GPN1 (GPN-loop GTPase 1 OS=Homo sapiens GN=GPN1 PE=1 SV=1)

HSP 1 Score: 380.178 bits (975), Expect = 1.009e-131
Identity = 169/241 (70.12%), Postives = 208/241 (86.31%), Query Frame = 0

Query:   42 CVLVLGMAGSGKSSFVQRLTSHLHTKKQPPYVINLDPAINEVIYPCNIDIRDTVDYKEVMKQYNLGPNGGIMTSLNLFSTKFDQVLNYLEQKKDKSSLVLIDTPGQIEAFTWSASGSIITESLATTFPSVIVYVMDTVRSVSPVTFMSNMLYACSIMYKTKLPFIVVLSKIDVIDHSFIKEWMEDFEVFQEALDADTSYTSNLARSMSLVLDEFYSHLNCVGVSSLTGDGMDDFMKALENA 282
            C+LVLGMAGSGK++FVQRLT HLH +  PPYVINLDPA++EV +P NIDIRDTV YKEVMKQY LGPNGGI+TSLNLF+T+FDQV+ ++E+ ++ S  VLIDTPGQIE FTWSASG+IITE+LA++FP+V++YVMDT RS +PVTFMSNMLYACSI+YKTKLPFIVV++K D+IDHSF  EWM+DFE FQ+AL+ +T+Y SNL RSMSLVLDEFYS L  VGVS++ G G+D+    + +A
Sbjct:   21 CLLVLGMAGSGKTTFVQRLTGHLHAQGTPPYVINLDPAVHEVPFPANIDIRDTVKYKEVMKQYGLGPNGGIVTSLNLFATRFDQVMKFIEKAQNMSKYVLIDTPGQIEVFTWSASGTIITEALASSFPTVVIYVMDTSRSTNPVTFMSNMLYACSILYKTKLPFIVVMNKTDIIDHSFAVEWMQDFEAFQDALNQETTYVSNLTRSMSLVLDEFYSSLRVVGVSAVLGTGLDELFVQVTSA 261

The following BLAST results are available for this feature:

BLAST of TCONS_00022626-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00022626-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
GPN1	1.009e-131	70.12	GPN-loop GTPase 1 OS=Homo sapiens GN=GPN1 PE=1 SV=...	[more]

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TCONS_00022626-protein (polypeptide) - C. hemisphaerica