TCONS_00022500-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00022500-protein
Unique Name	TCONS_00022500-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	407

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00022500-protein ID=TCONS_00022500-protein|Name=TCONS_00022500-protein|organism=Clytia hemisphaerica|type=polypeptide|length=407bp
MDNEPMKKKKKGSKNRKKGWRKNVDVEDVEQHLEDTRRDERTGGSAADIE
SKDLFFVEKEVKNLAPQKKSKHKHTSEDEEHDEEVYVPKKQQFMEQLHRE
KEKELKRKKAEKSKKAVNVWGQEVLTVKDAYLDSTVKKAKVKPNTVGRGK
LEGVGAVLQPHPGSSYNPDFDSHQDLLGKAHSEEEEKLKAAVKLNMQVKM
VSVQQLKKQGDIWLKEMSEGLNKKKGGSDDDSSDEEEDEDETNGLNSKRK
KERKTGQQRRRTKLRRTQEKERFEAKQLNQRLHDVFRLRTMNKEIRQAEE
QHALRIQEKVKQQEEIEKTRTKRLSKYKFQEDGTTYQLSEDLSGSLRELR
PEGNLIKDRYRSLQRRNIIEVRRPVVPHRRYKRKVVTRRSYLAPTIRDFN
PTRKKGT

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_012623	XLOC_012623	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00022500	TCONS_00022500	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR011687	Nop53/GLTSCR2

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 288..308
None	No IPR available	COILS	Coil	Coil	coord: 91..114
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 217..272
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..49
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 62..90
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 152..174
IPR011687	Ribosome biogenesis protein Nop53/GLTSCR2	PIRSF	PIRSF017302	Gltscr2	coord: 89..404 e-value: 3.0E-50 score: 169.4 coord: 1..119 e-value: 2.2E-12 score: 44.6
IPR011687	Ribosome biogenesis protein Nop53/GLTSCR2	PFAM	PF07767	Nop53	coord: 13..363 e-value: 2.1E-65 score: 221.6

Blast

[Close]

BLAST of TCONS_00022500-protein vs. Swiss-Prot (Human)
Match: NOP53 (Ribosome biogenesis protein NOP53 OS=Homo sapiens GN=NOP53 PE=1 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 1.276e-26
Identity = 118/436 (27.06%), Postives = 198/436 (45.41%), Query Frame = 0

Query:   19 GWRKNVDVE---DVEQHLEDTRRDERT-GGSAADIESKDLFFVEKEVKNLAPQKKSKHKHTSEDE-----------EHDEEVYVPK---------------KQQFMEQLHREKE--KELKRKKAEKSKKAV----------------NVWGQE------VLTVKDAYLDSTVKKAKVKPNTVGRGKLEGVGAVLQPHPGSSYNPDFDSHQDLLGKAHSEEEEKLKAAVKLNMQVKMVSVQQLKKQGDIWLKEMSEGLNKKKGGSDDDSSDEEEDEDETNGLNSKRK---KERKTGQQRRRTKLRRTQEKERFEAKQLNQRLHDVFRLRTMNKEIRQAEEQHALRIQE------KVKQQEEIEKTRTKRLSKYKFQEDGTTYQLSEDLSGSLRELRPEGNLIKDRYRSLQRRNIIEVRRPVVPHRRYKRKVVTRRSY 391
            GWR+        +V+Q LED R  ERT GG  ++  ++ LFFV+   K     KK                     E+  +V  PK               K+Q  E+L ++ E  +E++R +A     +                 ++W  +      ++   + +L+ T KK   +P  +     +     + P  G+SYNP F+ HQ LL  AH  E ++ K A KL  Q+ + + +Q   Q   + +E+ EGL ++  G  +    E  +  +     +  +    E+KT QQRRR K       ++   +    R  ++FRLR +  ++       ALR+ E      + + + E E  + +RL + K+Q      QLS +L+ SLR L+PEGN+++DR++S QRRN+IE R      R+YK K+V +R++
Sbjct:   47 GWRRLAQEPLGLEVDQFLEDVRLQERTSGGLLSEAPNEKLFFVDTGSKEKGLTKKRTKVQKKSLLLKKPLRVDLILENTSKVPAPKDVLAHQVPNAKKLRRKEQLWEKLAKQGELPREVRRAQARLLNPSATRAKPGPQDTVERPFYDLWASDNPLDRPLVGQDEFFLEQTKKKGVKRPARLHTKPSQAPAVEVAPA-GASYNPSFEDHQTLLSAAHEVELQRQKEAEKLERQLALPATEQAATQESTF-QELCEGLLEESDGEGEPGQGEGPEAGDAEVCPTPARLATTEKKTEQQRRREKAVHRLRVQQAALRAARLRHQELFRLRGIKAQV-------ALRLAELARRQRRRQARREAEADKPRRLGRLKYQAPDIDVQLSSELTDSLRTLKPEGNILRDRFKSFQRRNMIEPRERAKFKRKYKVKLVEKRAF 473

The following BLAST results are available for this feature:

BLAST of TCONS_00022500-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00022500-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
NOP53	1.276e-26	27.06	Ribosome biogenesis protein NOP53 OS=Homo sapiens ...	[more]

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TCONS_00022500-protein (polypeptide) - C. hemisphaerica