TCONS_00022498-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00022498-protein
Unique NameTCONS_00022498-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length234

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00022498-protein ID=TCONS_00022498-protein|Name=TCONS_00022498-protein|organism=Clytia hemisphaerica|type=polypeptide|length=234bp
MQIGDQPQEKRTKSPPQPAPVPLKRGQKKKLKKMKEKYKDQDEEDRQLMK
EILQSGGSEKLSKKKAKANASKMMKQTGVTKQQQQNKVKKHNLVAMDILH
QEEAEIPSGTKNADIGNNENEDEEEDKEEKQDQNENILDTLTGQPIGDDL
LLYAVPVCAPYSCMQPYKYKVKVTPGTGKRGRAAKSAIHMFLQAKEATDW
EKDLLKSLKDVDISRNIPGKVKISAPNMQRIKKK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_012622XLOC_012622Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00022498TCONS_00022498Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR021846DUF3441
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 24..51
NoneNo IPR availableCOILSCoilCoilcoord: 113..140
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..133
IPR021846Domain of unknown function DUF3441PFAMPF11923DUF3441coord: 127..224
e-value: 3.8E-29
score: 100.9

Blast
[Close]
BLAST of TCONS_00022498-protein vs. Swiss-Prot (Human)
Match: NEMF (Nuclear export mediator factor NEMF OS=Homo sapiens GN=NEMF PE=1 SV=4)

HSP 1 Score: 162.155 bits (409), Expect = 1.232e-45
Identity = 104/222 (46.85%), Postives = 147/222 (66.22%), Query Frame = 0 
Query:   22 PLKRGQKKKLKKMKEKYKDQDEEDRQLMKEILQSGGSEKLSKKKAKANASKMMKQTGVTKQQQQ--------NKVKKHNLVAMDILHQEEAEIPSGTKNADIG-NNENEDEEEDKEEKQDQNENILDTLTGQPIGDDLLLYAVPVCAPYSCMQPYKYKVKVTPGTGKRGRAAKSAIHMFLQAKEATDWEKDLLKSLKDVDISRNIPGKVKISAPNMQRIKKK 234
            P+KRGQK K+KKMKEKYKDQDEEDR+L+ ++L S GS    ++K K       K   V KQ Q+        + +KK       I H+ +          D   ++ ++D+EE   ++Q   EN+ D+LTGQP  +D+LL+A+P+CAPY+ M  YKYKVK+TPG  K+G+AAK+A++ F+ +KEAT  EKDL +S+KD D+SRNIPGKVK+SAPN+  +K+K
Sbjct:  867 PMKRGQKSKMKKMKEKYKDQDEEDRELIMKLLGSAGSN--KEEKGKKGKKGKTKDEPVKKQPQKPRGGQRVSDNIKKETPFLEVITHELQ----------DFAVDDPHDDKEEQDLDQQGNEENLFDSLTGQPHPEDVLLFAIPICAPYTTMTNYKYKVKLTPGVQKKGKAAKTALNSFMHSKEATAREKDLFRSVKDTDLSRNIPGKVKVSAPNLLNVKRK 1076
The following BLAST results are available for this feature:
BLAST of TCONS_00022498-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NEMF1.232e-4546.85Nuclear export mediator factor NEMF OS=Homo sapien... [more]
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